PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
3301-3350 / 86044 show all
astatham-gatkSNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
74.1379
1501500
astatham-gatkSNPtimap_l150_m2_e1homalt
99.3663
98.8561
99.8818
70.6476
760588760598
88.8889
astatham-gatkSNPtimap_l250_m0_e0*
93.8385
89.4891
98.6323
93.8175
12261441226173
17.6471
astatham-gatkSNPtimap_l250_m0_e0het
91.6667
85.9743
98.1663
94.6856
803131803151
6.6667
astatham-gatkSNPtimap_l250_m0_e0hetalt
0.0000
100.0000
00000
astatham-gatkSNPtimap_l250_m0_e0homalt
98.2578
97.0183
99.5294
90.9651
4231342322
100.0000
astatham-gatkSNPtimap_l250_m1_e0*
92.9011
87.3116
99.2552
90.3133
399858139983012
40.0000
astatham-gatkSNPtimap_l250_m1_e0het
89.5242
81.7722
98.8998
92.0567
24275412427279
33.3333
astatham-gatkSNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
84.0000
40400
astatham-gatkSNPtimap_l250_m1_e0homalt
98.6465
97.5109
99.8089
85.2776
156740156733
100.0000
astatham-gatkSNPtimap_l250_m2_e0*
92.8085
87.1006
99.3169
90.7841
436264643623012
40.0000
astatham-gatkSNPtimap_l250_m2_e0het
89.3237
81.3768
98.9907
92.3822
26486062648279
33.3333
astatham-gatkSNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
82.7586
50500
astatham-gatkSNPtimap_l250_m2_e0homalt
98.7576
97.7130
99.8248
86.3182
170940170933
100.0000
astatham-gatkSNPtimap_l250_m2_e1*
92.8549
87.1749
99.3266
90.8364
442565144253012
40.0000
astatham-gatkSNPtimap_l250_m2_e1het
89.3914
81.4792
99.0055
92.4310
26886112688279
33.3333
astatham-gatkSNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
82.7586
50500
astatham-gatkSNPtimap_l250_m2_e1homalt
98.7739
97.7427
99.8271
86.3568
173240173233
100.0000
astatham-gatkSNPtimap_siren*
94.0656
88.8705
99.9059
56.9785
8918611169891718446
54.7619
astatham-gatkSNPtimap_sirenhet
90.2825
82.3747
99.8698
61.4644
5138710995513786730
44.7761
astatham-gatkSNPtimap_sirenhetalt
99.1150
98.2456
100.0000
68.0000
5615600
astatham-gatkSNPtimap_sirenhomalt
99.7489
99.5437
99.9550
48.8366
37743173377371716
94.1176
astatham-gatkSNPtisegdup*
99.2327
98.6385
99.8342
89.7728
1927126619269326
18.7500
astatham-gatkSNPtisegduphet
98.8338
97.9219
99.7628
90.8470
1178025011778282
7.1429
astatham-gatkSNPtisegduphetalt
100.0000
100.0000
100.0000
98.5294
20200
astatham-gatkSNPtisegduphomalt
99.8666
99.7868
99.9466
87.4281
748916748944
100.0000
astatham-gatkSNPtisegdupwithalt*
0.0000
100.0000
00000
astatham-gatkSNPtisegdupwithalthet
0.0000
100.0000
00000
astatham-gatkSNPtisegdupwithalthetalt
0.0000
100.0000
00000
astatham-gatkSNPtisegdupwithalthomalt
0.0000
100.0000
00000
astatham-gatkSNPtitech_badpromoters*
98.2249
97.6471
98.8095
45.0980
8328311
100.0000
astatham-gatkSNPtitech_badpromotershet
97.6744
95.4545
100.0000
48.1481
4224200
astatham-gatkSNPtitech_badpromotershetalt
0.0000
0.0000
0.0000
00000
astatham-gatkSNPtitech_badpromotershomalt
98.7952
100.0000
97.6190
41.6667
4104111
100.0000
astatham-gatkSNPtv**
99.5449
99.1184
99.9751
22.0764
961141854996105923961
25.5230
astatham-gatkSNPtv*het
99.2722
98.5893
99.9647
23.3815
583349834758328220635
16.9903
astatham-gatkSNPtv*hetalt
99.7699
99.5408
100.0000
40.6164
867486700
astatham-gatkSNPtv*homalt
99.9694
99.9475
99.9912
19.9071
3769251983769103326
78.7879
astatham-gatkSNPtvHG002complexvar*
99.1122
98.2547
99.9847
22.3181
24185642962417693721
56.7568
astatham-gatkSNPtvHG002complexvarhet
98.5778
97.2116
99.9829
21.9634
14652842031464562511
44.0000
astatham-gatkSNPtvHG002complexvarhetalt
99.6764
99.3548
100.0000
35.9667
308230800
astatham-gatkSNPtvHG002complexvarhomalt
99.9458
99.9043
99.9874
22.8056
9502091950051210
83.3333
astatham-gatkSNPtvHG002compoundhet*
99.1767
98.5543
99.8069
49.0836
879412987891716
94.1176
astatham-gatkSNPtvHG002compoundhethet
98.5818
97.4321
99.7590
55.5988
455312045531111
100.0000
astatham-gatkSNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
22.4932
858485800
astatham-gatkSNPtvHG002compoundhethomalt
99.8376
99.8524
99.8227
42.7314
33835337865
83.3333
astatham-gatkSNPtvdecoy*
0.0000
100.0000
00000
astatham-gatkSNPtvdecoyhet
0.0000
100.0000
00000
astatham-gatkSNPtvdecoyhetalt
0.0000
100.0000
00000
astatham-gatkSNPtvdecoyhomalt
0.0000
100.0000
00000