PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33351-33400 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | * | map_l250_m2_e0 | homalt | 97.8541 | 99.1304 | 96.6102 | 95.7812 | 114 | 1 | 114 | 4 | 3 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | * | 95.8904 | 94.5946 | 97.2222 | 95.7558 | 315 | 18 | 315 | 9 | 3 | 33.3333 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | het | 95.1515 | 92.8910 | 97.5248 | 95.5943 | 196 | 15 | 197 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.2036 | 4 | 2 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | homalt | 97.8723 | 99.1379 | 96.6387 | 95.8709 | 115 | 1 | 115 | 4 | 3 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_siren | * | 96.8227 | 95.3306 | 98.3622 | 80.8381 | 7064 | 346 | 7147 | 119 | 50 | 42.0168 | |
| gduggal-bwafb | INDEL | * | map_siren | het | 96.6142 | 94.9645 | 98.3223 | 79.9104 | 4281 | 227 | 4454 | 76 | 20 | 26.3158 | |
| gduggal-bwafb | INDEL | * | map_siren | hetalt | 81.9967 | 71.2551 | 96.5517 | 92.6020 | 176 | 71 | 84 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_siren | homalt | 98.3408 | 98.1921 | 98.4900 | 81.3372 | 2607 | 48 | 2609 | 40 | 27 | 67.5000 | |
| gduggal-bwafb | INDEL | * | segdup | * | 97.4038 | 96.1659 | 98.6739 | 94.2256 | 2458 | 98 | 2530 | 34 | 21 | 61.7647 | |
| gduggal-bwafb | INDEL | * | segdup | het | 96.9413 | 95.2251 | 98.7204 | 94.3651 | 1396 | 70 | 1543 | 20 | 8 | 40.0000 | |
| gduggal-bwafb | INDEL | * | segdup | hetalt | 91.3096 | 87.6923 | 95.2381 | 96.9828 | 114 | 16 | 40 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | * | segdup | homalt | 98.7493 | 98.7500 | 98.7487 | 93.7209 | 948 | 12 | 947 | 12 | 11 | 91.6667 | |
| gduggal-bwafb | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9972 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9956 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | tech_badpromoters | * | 95.9637 | 93.4211 | 98.6486 | 48.6111 | 71 | 5 | 73 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | tech_badpromoters | het | 93.1507 | 87.1795 | 100.0000 | 41.5385 | 34 | 5 | 38 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 4 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | tech_badpromoters | homalt | 98.5075 | 100.0000 | 97.0588 | 53.4247 | 33 | 0 | 33 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | C16_PLUS | * | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C16_PLUS | * | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | * | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | decoy | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | decoy | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | decoy | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||