PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33301-33350 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | * | map_l100_m2_e0 | het | 95.9110 | 93.8882 | 98.0228 | 83.5180 | 2166 | 141 | 2231 | 45 | 7 | 15.5556 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e0 | hetalt | 75.4805 | 61.6000 | 97.4359 | 93.3219 | 77 | 48 | 38 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e0 | homalt | 98.5676 | 98.2554 | 98.8818 | 84.8792 | 1239 | 22 | 1238 | 14 | 12 | 85.7143 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | * | 96.0874 | 94.0096 | 98.2592 | 84.3618 | 3531 | 225 | 3556 | 63 | 22 | 34.9206 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | het | 95.8207 | 93.7687 | 97.9645 | 83.6078 | 2197 | 146 | 2262 | 47 | 8 | 17.0213 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | hetalt | 73.5849 | 59.0909 | 97.5000 | 93.2660 | 78 | 54 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | homalt | 98.4321 | 98.0484 | 98.8189 | 84.9917 | 1256 | 25 | 1255 | 15 | 13 | 86.6667 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | * | 96.5071 | 95.4649 | 97.5723 | 88.6736 | 842 | 40 | 844 | 21 | 5 | 23.8095 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | het | 95.7648 | 94.0375 | 97.5567 | 88.0025 | 552 | 35 | 559 | 14 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 97.4194 | 9 | 2 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | homalt | 98.2517 | 98.9437 | 97.5694 | 89.3570 | 281 | 3 | 281 | 7 | 5 | 71.4286 | |
| gduggal-bwafb | INDEL | * | map_l125_m1_e0 | * | 96.9083 | 95.7760 | 98.0676 | 85.9889 | 2018 | 89 | 2030 | 40 | 8 | 20.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m1_e0 | het | 96.0719 | 94.6067 | 97.5831 | 85.2463 | 1263 | 72 | 1292 | 32 | 2 | 6.2500 | |
| gduggal-bwafb | INDEL | * | map_l125_m1_e0 | hetalt | 90.4110 | 82.5000 | 100.0000 | 95.1952 | 33 | 7 | 16 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l125_m1_e0 | homalt | 98.7688 | 98.6339 | 98.9041 | 86.6472 | 722 | 10 | 722 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | * | 96.9636 | 95.8106 | 98.1447 | 86.9397 | 2104 | 92 | 2116 | 40 | 8 | 20.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | het | 96.1556 | 94.6801 | 97.6778 | 86.3185 | 1317 | 74 | 1346 | 32 | 2 | 6.2500 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 95.5381 | 34 | 8 | 17 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | homalt | 98.8189 | 98.6894 | 98.9488 | 87.4319 | 753 | 10 | 753 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | * | 96.8910 | 95.7753 | 98.0329 | 87.0344 | 2131 | 94 | 2143 | 43 | 9 | 20.9302 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | het | 96.1685 | 94.7443 | 97.6361 | 86.4189 | 1334 | 74 | 1363 | 33 | 3 | 9.0909 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | hetalt | 88.3117 | 79.0698 | 100.0000 | 95.5959 | 34 | 9 | 17 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | homalt | 98.6425 | 98.5788 | 98.7063 | 87.5222 | 763 | 11 | 763 | 10 | 6 | 60.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | * | 96.0765 | 95.1362 | 97.0356 | 91.6003 | 489 | 25 | 491 | 15 | 3 | 20.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | het | 94.9769 | 93.5484 | 96.4497 | 90.9601 | 319 | 22 | 326 | 12 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 97.4790 | 8 | 1 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | homalt | 98.4802 | 98.7805 | 98.1818 | 92.3823 | 162 | 2 | 162 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | * | 96.3775 | 95.2915 | 97.4886 | 88.7239 | 1275 | 63 | 1281 | 33 | 7 | 21.2121 | |
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | het | 95.6334 | 94.2690 | 97.0379 | 88.0521 | 806 | 49 | 819 | 25 | 1 | 4.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | hetalt | 86.4865 | 76.1905 | 100.0000 | 96.5116 | 16 | 5 | 9 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | homalt | 98.1582 | 98.0519 | 98.2646 | 89.3558 | 453 | 9 | 453 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e0 | * | 96.4133 | 95.3125 | 97.5398 | 89.5080 | 1342 | 66 | 1348 | 34 | 8 | 23.5294 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e0 | het | 95.7120 | 94.3709 | 97.0917 | 88.8376 | 855 | 51 | 868 | 26 | 2 | 7.6923 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e0 | hetalt | 86.4865 | 76.1905 | 100.0000 | 96.9283 | 16 | 5 | 9 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l150_m2_e0 | homalt | 98.1250 | 97.9210 | 98.3299 | 90.1643 | 471 | 10 | 471 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e1 | * | 96.4212 | 95.3440 | 97.5230 | 89.5147 | 1372 | 67 | 1378 | 35 | 8 | 22.8571 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e1 | het | 95.7962 | 94.4805 | 97.1491 | 88.8645 | 873 | 51 | 886 | 26 | 2 | 7.6923 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e1 | hetalt | 85.0000 | 73.9130 | 100.0000 | 96.6667 | 17 | 6 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l150_m2_e1 | homalt | 98.0671 | 97.9675 | 98.1670 | 90.1524 | 482 | 10 | 482 | 9 | 6 | 66.6667 | |
| gduggal-bwafb | INDEL | * | map_l250_m0_e0 | * | 94.1935 | 93.5897 | 94.8052 | 97.6388 | 73 | 5 | 73 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m0_e0 | het | 92.4528 | 92.4528 | 92.4528 | 97.3042 | 49 | 4 | 49 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | map_l250_m0_e0 | homalt | 97.9592 | 96.0000 | 100.0000 | 98.0551 | 24 | 1 | 24 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | * | 95.5075 | 94.0984 | 96.9595 | 95.4215 | 287 | 18 | 287 | 9 | 3 | 33.3333 | |
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | het | 94.6019 | 92.1053 | 97.2376 | 95.3423 | 175 | 15 | 176 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.7941 | 4 | 2 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | homalt | 97.7376 | 99.0826 | 96.4286 | 95.4155 | 108 | 1 | 108 | 4 | 3 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e0 | * | 95.8652 | 94.5619 | 97.2050 | 95.6651 | 313 | 18 | 313 | 9 | 3 | 33.3333 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e0 | het | 95.1279 | 92.8571 | 97.5124 | 95.5003 | 195 | 15 | 196 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.1707 | 4 | 2 | 3 | 0 | 0 | ||