PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33251-33300 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 91.8238 | 95.1411 | 88.7300 | 60.2423 | 10926 | 558 | 10920 | 1387 | 1378 | 99.3511 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 91.1270 | 87.3774 | 95.2128 | 60.8815 | 57102 | 8249 | 63963 | 3216 | 2822 | 87.7488 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 91.6563 | 86.8570 | 97.0171 | 59.4271 | 26474 | 4006 | 42997 | 1322 | 971 | 73.4493 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 87.8267 | 81.6103 | 95.0682 | 57.7013 | 13633 | 3072 | 3971 | 206 | 202 | 98.0583 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 92.2413 | 93.5539 | 90.9650 | 64.4972 | 16995 | 1171 | 16995 | 1688 | 1649 | 97.6896 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.4932 | 92.6377 | 96.4246 | 45.4241 | 33898 | 2694 | 37756 | 1400 | 1310 | 93.5714 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.7841 | 93.1472 | 98.5746 | 46.7673 | 14680 | 1080 | 25103 | 363 | 284 | 78.2369 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 91.3561 | 86.7685 | 96.4558 | 48.1730 | 9089 | 1386 | 2531 | 93 | 92 | 98.9247 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.5282 | 97.7986 | 91.4694 | 41.2757 | 10129 | 228 | 10122 | 944 | 934 | 98.9407 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 73.4367 | 65.0167 | 84.3621 | 45.9065 | 1366 | 735 | 1845 | 342 | 338 | 98.8304 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.3138 | 61.2245 | 97.8261 | 47.4389 | 300 | 190 | 1305 | 29 | 26 | 89.6552 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 72.8203 | 57.4281 | 99.4845 | 34.4595 | 719 | 533 | 193 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 68.1729 | 96.6574 | 52.6555 | 45.4921 | 347 | 12 | 347 | 312 | 311 | 99.6795 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2808 | 98.8889 | 99.6759 | 57.1851 | 27946 | 314 | 27984 | 91 | 76 | 83.5165 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.2884 | 98.8435 | 99.7372 | 57.4242 | 16239 | 190 | 16321 | 43 | 29 | 67.4419 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.8240 | 87.8505 | 98.3945 | 74.4282 | 470 | 65 | 429 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.5570 | 99.4777 | 99.6364 | 55.6678 | 11237 | 59 | 11234 | 41 | 40 | 97.5610 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 72.5395 | 63.7097 | 84.2105 | 99.9318 | 79 | 45 | 80 | 15 | 12 | 80.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 70.2459 | 57.4713 | 90.3226 | 99.9104 | 50 | 37 | 56 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.9681 | 8 | 8 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.6327 | 100.0000 | 68.9655 | 99.9497 | 21 | 0 | 20 | 9 | 9 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 93.9385 | 90.7361 | 97.3752 | 52.7808 | 18022 | 1840 | 18957 | 511 | 394 | 77.1037 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.7221 | 89.8362 | 97.9593 | 52.4760 | 9979 | 1129 | 12193 | 254 | 153 | 60.2362 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 88.7892 | 84.1909 | 93.9189 | 55.0542 | 2258 | 424 | 973 | 63 | 62 | 98.4127 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 96.0102 | 95.2734 | 96.7586 | 52.9962 | 5785 | 287 | 5791 | 194 | 179 | 92.2680 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.9919 | 72.4294 | 91.8503 | 55.9362 | 1923 | 732 | 2209 | 196 | 151 | 77.0408 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 76.8190 | 64.3595 | 95.2607 | 61.2844 | 623 | 345 | 1206 | 60 | 23 | 38.3333 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 81.5240 | 69.7071 | 98.1651 | 30.1282 | 833 | 362 | 535 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.1043 | 94.9187 | 78.7879 | 57.8125 | 467 | 25 | 468 | 126 | 118 | 93.6508 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.3102 | 95.9453 | 98.7144 | 44.6603 | 6460 | 273 | 6834 | 89 | 78 | 87.6404 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9324 | 95.1886 | 98.7412 | 44.6522 | 3482 | 176 | 4471 | 57 | 46 | 80.7018 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 95.1872 | 94.4745 | 95.9108 | 49.8134 | 872 | 51 | 258 | 11 | 11 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.4340 | 97.8625 | 99.0122 | 43.9494 | 2106 | 46 | 2105 | 21 | 21 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 87.4768 | 80.1802 | 96.2343 | 47.0067 | 178 | 44 | 230 | 9 | 9 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 82.1148 | 70.0000 | 99.3007 | 50.8591 | 35 | 15 | 142 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 85.9670 | 76.8000 | 97.6190 | 25.0000 | 96 | 29 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 93.0693 | 100.0000 | 87.0370 | 48.0769 | 47 | 0 | 47 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | * | 96.4693 | 95.1376 | 97.8389 | 85.1430 | 1487 | 76 | 1494 | 33 | 7 | 21.2121 | |
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | het | 95.7880 | 94.1234 | 97.5124 | 84.4692 | 961 | 60 | 980 | 25 | 1 | 4.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 94.4444 | 24 | 9 | 12 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | homalt | 98.5280 | 98.6248 | 98.4314 | 85.7978 | 502 | 7 | 502 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m1_e0 | * | 96.2346 | 94.2833 | 98.2684 | 83.2956 | 3381 | 205 | 3405 | 60 | 20 | 33.3333 | |
| gduggal-bwafb | INDEL | * | map_l100_m1_e0 | het | 95.9196 | 93.9597 | 97.9629 | 82.4460 | 2100 | 135 | 2164 | 45 | 7 | 15.5556 | |
| gduggal-bwafb | INDEL | * | map_l100_m1_e0 | hetalt | 75.2274 | 61.2903 | 97.3684 | 92.9630 | 76 | 48 | 37 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m1_e0 | homalt | 98.5277 | 98.2070 | 98.8506 | 84.0137 | 1205 | 22 | 1204 | 14 | 12 | 85.7143 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e0 | * | 96.2600 | 94.2865 | 98.3179 | 84.2676 | 3482 | 211 | 3507 | 60 | 20 | 33.3333 | |