PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
32701-32750 / 86044 show all
eyeh-varpipeSNPtimap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
67.5456
24016000
eyeh-varpipeSNPtimap_l125_m1_e0homalt
99.8628
99.8280
99.8977
68.2342
110261910743116
54.5455
eyeh-varpipeSNPtimap_l125_m2_e0*
99.2792
99.6596
98.9018
74.7286
301551032962932921
6.3830
eyeh-varpipeSNPtimap_l125_m2_e0het
98.9240
99.5550
98.3009
76.7289
18792841839831815
4.7170
eyeh-varpipeSNPtimap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
69.4885
24017300
eyeh-varpipeSNPtimap_l125_m2_e0homalt
99.8667
99.8327
99.9006
70.5235
113391911058116
54.5455
eyeh-varpipeSNPtimap_l125_m2_e1*
99.2798
99.6598
98.9027
74.7802
304651042992533221
6.3253
eyeh-varpipeSNPtimap_l125_m2_e1het
98.9249
99.5547
98.3030
76.7768
19002851859532115
4.6729
eyeh-varpipeSNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
69.2308
24017600
eyeh-varpipeSNPtimap_l125_m2_e1homalt
99.8678
99.8342
99.9015
70.5782
114391911154116
54.5455
eyeh-varpipeSNPtimap_l150_m0_e0*
98.7920
99.4784
98.1149
82.5537
78204177031487
4.7297
eyeh-varpipeSNPtimap_l150_m0_e0het
98.2368
99.2937
97.2021
84.3948
50613649681434
2.7972
eyeh-varpipeSNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
78.1726
304300
eyeh-varpipeSNPtimap_l150_m0_e0homalt
99.8168
99.8189
99.8146
77.6220
27565269253
60.0000
eyeh-varpipeSNPtimap_l150_m1_e0*
99.1809
99.6144
98.7511
77.4196
19636761929324416
6.5574
eyeh-varpipeSNPtimap_l150_m1_e0het
98.7761
99.4907
98.0716
79.3788
12307631205323711
4.6414
eyeh-varpipeSNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
71.8157
15010400
eyeh-varpipeSNPtimap_l150_m1_e0homalt
99.8623
99.8226
99.9020
73.1001
731413713675
71.4286
eyeh-varpipeSNPtimap_l150_m2_e0*
99.1763
99.6246
98.7319
78.7456
20435772008825816
6.2016
eyeh-varpipeSNPtimap_l150_m2_e0het
98.7657
99.5031
98.0391
80.4407
12817641254925111
4.3825
eyeh-varpipeSNPtimap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
73.2861
15011300
eyeh-varpipeSNPtimap_l150_m2_e0homalt
99.8676
99.8293
99.9058
75.1080
760313742675
71.4286
eyeh-varpipeSNPtimap_l150_m2_e1*
99.1748
99.6284
98.7252
78.8203
20646772029126216
6.1069
eyeh-varpipeSNPtimap_l150_m2_e1het
98.7627
99.5083
98.0281
80.5176
12951641267725511
4.3137
eyeh-varpipeSNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
73.0679
15011500
eyeh-varpipeSNPtimap_l150_m2_e1homalt
99.8689
99.8310
99.9067
75.1753
768013749975
71.4286
eyeh-varpipeSNPtimap_l250_m0_e0*
98.2427
99.2701
97.2364
94.1737
1360101337381
2.6316
eyeh-varpipeSNPtimap_l250_m0_e0het
97.4777
98.9293
96.0680
94.6040
92410904370
0.0000
eyeh-varpipeSNPtimap_l250_m0_e0hetalt
0.0000
0.0000
100.0000
94.3182
00500
eyeh-varpipeSNPtimap_l250_m0_e0homalt
99.8833
100.0000
99.7669
92.9359
436042811
100.0000
eyeh-varpipeSNPtimap_l250_m1_e0*
98.9581
99.3885
98.5313
90.1600
4551284495676
8.9552
eyeh-varpipeSNPtimap_l250_m1_e0het
98.4913
99.1914
97.8011
90.9985
2944242891654
6.1539
eyeh-varpipeSNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
86.8571
402300
eyeh-varpipeSNPtimap_l250_m1_e0homalt
99.8123
99.7511
99.8737
88.1405
16034158122
100.0000
eyeh-varpipeSNPtimap_l250_m2_e0*
99.0376
99.4409
98.6375
90.5192
4980284923686
8.8235
eyeh-varpipeSNPtimap_l250_m2_e0het
98.6087
99.2624
97.9636
91.2085
3230243175664
6.0606
eyeh-varpipeSNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
86.8293
502700
eyeh-varpipeSNPtimap_l250_m2_e0homalt
99.8276
99.7713
99.8839
88.9360
17454172122
100.0000
eyeh-varpipeSNPtimap_l250_m2_e1*
99.0209
99.4484
98.5971
90.5779
5048284990716
8.4507
eyeh-varpipeSNPtimap_l250_m2_e1het
98.5825
99.2725
97.9021
91.2682
3275243220694
5.7971
eyeh-varpipeSNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
87.0813
502700
eyeh-varpipeSNPtimap_l250_m2_e1homalt
99.8298
99.7743
99.8854
88.9822
17684174322
100.0000
eyeh-varpipeSNPtimap_siren*
99.4355
99.7967
99.0768
57.9702
1001512049787491255
6.0307
eyeh-varpipeSNPtimap_sirenhet
99.1597
99.7515
98.5748
60.2517
622271556065787734
3.8769
eyeh-varpipeSNPtimap_sirenhetalt
98.7189
98.2456
99.1968
68.8944
56149444
100.0000
eyeh-varpipeSNPtimap_sirenhomalt
99.8945
99.8734
99.9157
53.2558
3786848367233117
54.8387
eyeh-varpipeSNPtisegdup*
98.6842
99.8874
97.5096
89.9888
19515221922549113
2.6477
eyeh-varpipeSNPtisegduphet
97.9291
99.8421
96.0882
90.6738
1201119118154813
0.6237
eyeh-varpipeSNPtisegduphetalt
99.1597
100.0000
98.3333
95.5390
205911
100.0000
eyeh-varpipeSNPtisegduphomalt
99.9189
99.9600
99.8777
88.4551
75023735199
100.0000