PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 650 651 652 653 654 655 656 657 658 ... 1720 1721 » 32651-32700 / 86044 show all
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	*	0.0000	0.0000	33.3333	99.9533	0	0	1	2	0	0.0000
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	het		0.0000		100.0000	0	0	0	0	0
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt		0.0000		100.0000	0	0	0	0	0
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	0.0000	0.0000	33.3333	99.8458	0	0	1	2	0	0.0000
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	97.4056	99.5621	95.3406	49.3281	10685	47	10497	513	52	10.1365
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	96.5155	99.7628	93.4730	54.4025	6728	16	6559	458	33	7.2052
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.0392	100.0000	96.1538	79.7665	1	0	50	2	2	100.0000
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.9380	99.2225	98.6552	35.2022	3956	31	3888	53	17	32.0755
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	*	59.9965	83.1683	46.9231	93.4110	84	17	61	69	13	18.8406
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	het	64.2322	80.3030	53.5211	95.5261	53	13	38	33	1	3.0303
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	0.0000	0.0000	40.0000	95.0495	0	0	2	3	2	66.6667
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	54.0473	88.5714	38.8889	81.0526	31	4	21	33	10	30.3030
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000		100.0000	0	0	0	0	0
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000		100.0000	0	0	0	0	0
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000		100.0000	0	0	0	0	0
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000		100.0000	0	0	0	0	0
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.0758	99.7696	98.3916	38.1103	3897	9	3854	63	6	9.5238
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	98.7872	99.8789	97.7191	41.8567	2475	3	2442	57	4	7.0175
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	hetalt	100.0000	100.0000	100.0000	71.4286	1	0	14	0	0
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.5761	99.5795	99.5726	29.1625	1421	6	1398	6	2	33.3333
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	*	66.6667	100.0000	50.0000	97.1264	8	0	5	5	1	20.0000
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	het	88.8889	100.0000	80.0000	98.2818	6	0	4	1	0	0.0000
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	hetalt		0.0000		100.0000	0	0	0	0	0
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	homalt	33.3333	100.0000	20.0000	90.3846	2	0	1	4	1	25.0000
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_triTR_gt200	*		0.0000		100.0000	0	0	0	0	0
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_triTR_gt200	het		0.0000		100.0000	0	0	0	0	0
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_triTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_triTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
eyeh-varpipe	SNP	ti	map_l100_m0_e0	*	99.1630	99.6279	98.7023	71.7657	21690	81	21373	281	15	5.3381
eyeh-varpipe	SNP	ti	map_l100_m0_e0	het	98.7795	99.5137	98.0561	74.4857	13915	68	13670	271	10	3.6900
eyeh-varpipe	SNP	ti	map_l100_m0_e0	hetalt	100.0000	100.0000	100.0000	68.8705	14	0	113	0	0
eyeh-varpipe	SNP	ti	map_l100_m0_e0	homalt	99.8506	99.8328	99.8684	64.9624	7761	13	7590	10	5	50.0000
eyeh-varpipe	SNP	ti	map_l100_m1_e0	*	99.3616	99.7163	99.0095	67.2794	47795	136	46883	469	32	6.8230
eyeh-varpipe	SNP	ti	map_l100_m1_e0	het	99.0514	99.6226	98.4868	69.7302	29829	113	29158	448	19	4.2411
eyeh-varpipe	SNP	ti	map_l100_m1_e0	hetalt	99.8088	100.0000	99.6183	63.7119	29	0	261	1	1	100.0000
eyeh-varpipe	SNP	ti	map_l100_m1_e0	homalt	99.8788	99.8719	99.8856	62.1452	17937	23	17464	20	12	60.0000
eyeh-varpipe	SNP	ti	map_l100_m2_e0	*	99.3504	99.7181	98.9854	68.9913	48823	138	47903	491	32	6.5173
eyeh-varpipe	SNP	ti	map_l100_m2_e0	het	99.0330	99.6245	98.4486	71.1792	30507	115	29825	470	19	4.0426
eyeh-varpipe	SNP	ti	map_l100_m2_e0	hetalt	99.8165	100.0000	99.6337	65.9176	30	0	272	1	1	100.0000
eyeh-varpipe	SNP	ti	map_l100_m2_e0	homalt	99.8811	99.8744	99.8878	64.4546	18286	23	17806	20	12	60.0000
eyeh-varpipe	SNP	ti	map_l100_m2_e1	*	99.3531	99.7211	98.9878	69.0049	49347	138	48410	495	32	6.4647
eyeh-varpipe	SNP	ti	map_l100_m2_e1	het	99.0385	99.6286	98.4553	71.2000	30845	115	30148	473	19	4.0169
eyeh-varpipe	SNP	ti	map_l100_m2_e1	hetalt	99.8192	100.0000	99.6390	65.8025	31	0	276	1	1	100.0000
eyeh-varpipe	SNP	ti	map_l100_m2_e1	homalt	99.8795	99.8756	99.8834	64.4482	18471	23	17986	21	12	57.1429
eyeh-varpipe	SNP	ti	map_l125_m0_e0	*	99.0106	99.6082	98.4201	77.7397	12712	50	12521	201	11	5.4726
eyeh-varpipe	SNP	ti	map_l125_m0_e0	het	98.5647	99.5038	97.6432	79.9389	8222	41	8079	195	8	4.1026
eyeh-varpipe	SNP	ti	map_l125_m0_e0	hetalt	100.0000	100.0000	100.0000	75.0988	8	0	63	0	0
eyeh-varpipe	SNP	ti	map_l125_m0_e0	homalt	99.8314	99.7996	99.8632	71.9880	4482	9	4379	6	3	50.0000
eyeh-varpipe	SNP	ti	map_l125_m1_e0	*	99.2923	99.6523	98.9350	73.2001	29233	102	28704	309	21	6.7961
eyeh-varpipe	SNP	ti	map_l125_m1_e0	het	98.9460	99.5456	98.3535	75.5124	18183	83	17801	298	15	5.0336

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge