PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32501-32550 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | * | map_l125_m1_e0 | hetalt | 99.7260 | 100.0000 | 99.4536 | 69.3980 | 30 | 0 | 182 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m1_e0 | homalt | 99.8501 | 99.8107 | 99.8895 | 68.7779 | 16873 | 32 | 16269 | 18 | 10 | 55.5556 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | * | 98.7944 | 99.6939 | 97.9109 | 74.9243 | 46580 | 143 | 45227 | 965 | 38 | 3.9378 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | het | 98.1728 | 99.6214 | 96.7658 | 76.7357 | 29207 | 111 | 28304 | 946 | 28 | 2.9598 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | hetalt | 99.7442 | 100.0000 | 99.4898 | 71.2188 | 30 | 0 | 195 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | homalt | 99.8542 | 99.8158 | 99.8925 | 71.0277 | 17343 | 32 | 16728 | 18 | 10 | 55.5556 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e1 | * | 98.7976 | 99.6949 | 97.9163 | 74.9861 | 47058 | 144 | 45676 | 972 | 38 | 3.9095 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e1 | het | 98.1785 | 99.6221 | 96.7760 | 76.7928 | 29528 | 112 | 28607 | 953 | 28 | 2.9381 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e1 | hetalt | 99.7481 | 100.0000 | 99.4975 | 71.0756 | 30 | 0 | 198 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e1 | homalt | 99.8554 | 99.8175 | 99.8934 | 71.0933 | 17500 | 32 | 16871 | 18 | 10 | 55.5556 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | * | 97.7007 | 99.5180 | 95.9486 | 82.7662 | 11974 | 58 | 11652 | 492 | 15 | 3.0488 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | het | 96.6790 | 99.4207 | 94.0844 | 84.2276 | 7894 | 46 | 7666 | 482 | 11 | 2.2822 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | hetalt | 98.9474 | 100.0000 | 97.9167 | 79.8319 | 3 | 0 | 47 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | homalt | 99.7393 | 99.7065 | 99.7720 | 78.7376 | 4077 | 12 | 3939 | 9 | 4 | 44.4444 | |
| eyeh-varpipe | SNP | * | map_l150_m1_e0 | * | 98.5692 | 99.6472 | 97.5143 | 77.5222 | 30501 | 108 | 29619 | 755 | 30 | 3.9735 | |
| eyeh-varpipe | SNP | * | map_l150_m1_e0 | het | 97.8416 | 99.5651 | 96.1767 | 79.2991 | 19232 | 84 | 18640 | 741 | 22 | 2.9690 | |
| eyeh-varpipe | SNP | * | map_l150_m1_e0 | hetalt | 99.5781 | 100.0000 | 99.1597 | 73.6142 | 20 | 0 | 118 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m1_e0 | homalt | 99.8338 | 99.7871 | 99.8804 | 73.5129 | 11249 | 24 | 10861 | 13 | 8 | 61.5385 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e0 | * | 98.5884 | 99.6578 | 97.5418 | 78.8388 | 31743 | 109 | 30831 | 777 | 30 | 3.8610 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e0 | het | 97.8706 | 99.5778 | 96.2209 | 80.3517 | 20048 | 85 | 19427 | 763 | 22 | 2.8834 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e0 | hetalt | 99.6078 | 100.0000 | 99.2188 | 75.1456 | 20 | 0 | 127 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e0 | homalt | 99.8398 | 99.7949 | 99.8849 | 75.5076 | 11675 | 24 | 11277 | 13 | 8 | 61.5385 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e1 | * | 98.5942 | 99.6616 | 97.5494 | 78.9029 | 32101 | 109 | 31168 | 783 | 30 | 3.8314 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e1 | het | 97.8792 | 99.5826 | 96.2332 | 80.4169 | 20278 | 85 | 19646 | 769 | 22 | 2.8609 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e1 | hetalt | 99.6139 | 100.0000 | 99.2308 | 75.0480 | 20 | 0 | 129 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e1 | homalt | 99.8415 | 99.7971 | 99.8860 | 75.5645 | 11803 | 24 | 11393 | 13 | 8 | 61.5385 | |
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | * | 98.0582 | 99.2506 | 96.8941 | 94.2786 | 2119 | 16 | 2059 | 66 | 4 | 6.0606 | |
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | het | 97.4164 | 99.0704 | 95.8167 | 94.5377 | 1492 | 14 | 1443 | 63 | 2 | 3.1746 | |
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 85.7143 | 93.5185 | 0 | 0 | 6 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | homalt | 99.6776 | 99.6820 | 99.6732 | 93.5320 | 627 | 2 | 610 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | * | 98.8785 | 99.4323 | 98.3308 | 90.1611 | 7181 | 41 | 7010 | 119 | 12 | 10.0840 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | het | 98.4331 | 99.3060 | 97.5755 | 90.8816 | 4722 | 33 | 4588 | 114 | 8 | 7.0175 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | hetalt | 98.1132 | 100.0000 | 96.2963 | 87.5000 | 4 | 0 | 26 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | homalt | 99.7542 | 99.6752 | 99.8333 | 88.3918 | 2455 | 8 | 2396 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | * | 98.9405 | 99.4800 | 98.4068 | 90.5464 | 7844 | 41 | 7659 | 124 | 12 | 9.6774 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | het | 98.5164 | 99.3647 | 97.6826 | 91.1394 | 5161 | 33 | 5016 | 119 | 8 | 6.7227 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 87.6984 | 5 | 0 | 30 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | homalt | 99.7746 | 99.7022 | 99.8472 | 89.1514 | 2678 | 8 | 2613 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e1 | * | 98.9222 | 99.4867 | 98.3642 | 90.6150 | 7946 | 41 | 7757 | 129 | 12 | 9.3023 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e1 | het | 98.4883 | 99.3731 | 97.6190 | 91.2048 | 5231 | 33 | 5084 | 124 | 8 | 6.4516 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e1 | hetalt | 98.3607 | 100.0000 | 96.7742 | 88.0309 | 5 | 0 | 30 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e1 | homalt | 99.7772 | 99.7057 | 99.8489 | 89.2201 | 2710 | 8 | 2643 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_siren | * | 98.7590 | 99.8051 | 97.7347 | 59.1101 | 145943 | 285 | 141168 | 3272 | 81 | 2.4756 | |
| eyeh-varpipe | SNP | * | map_siren | het | 98.0835 | 99.7637 | 96.4589 | 61.2396 | 90776 | 215 | 87713 | 3220 | 51 | 1.5839 | |
| eyeh-varpipe | SNP | * | map_siren | hetalt | 98.9320 | 98.7654 | 99.0991 | 70.0162 | 80 | 1 | 550 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_siren | homalt | 99.8931 | 99.8749 | 99.9112 | 54.6593 | 55087 | 69 | 52905 | 47 | 25 | 53.1915 | |
| eyeh-varpipe | SNP | * | segdup | * | 98.2314 | 99.8753 | 96.6407 | 90.4939 | 28032 | 35 | 27387 | 952 | 22 | 2.3109 | |
| eyeh-varpipe | SNP | * | segdup | het | 97.2199 | 99.8383 | 94.7354 | 91.1282 | 17289 | 28 | 16861 | 937 | 7 | 0.7471 | |
| eyeh-varpipe | SNP | * | segdup | hetalt | 99.3197 | 100.0000 | 98.6486 | 95.3371 | 7 | 0 | 73 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | * | segdup | homalt | 99.9005 | 99.9348 | 99.8662 | 89.0870 | 10736 | 7 | 10453 | 14 | 14 | 100.0000 | |