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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
32101-32150 / 86044 show all
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
83.2380
80.8271
85.7971
78.5980
215512964948
97.9592
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
90.6416
91.6129
89.6907
78.8210
142131742019
95.0000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
55.9476
40.5405
90.2439
86.2416
15223744
100.0000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
77.8216
78.3784
77.2727
72.3618
5816852525
100.0000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
70.3015
64.9123
76.6667
98.8432
3720692116
76.1905
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
75.6646
71.4286
80.4348
98.6240
30123797
77.7778
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
58.8235
44.4444
86.9565
97.3714
452033
100.0000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
53.3333
50.0000
57.1429
99.4104
331296
66.6667
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
77.6919
72.9319
83.1165
45.6084
26899982939597575
96.3149
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
90.6327
87.6737
93.7984
45.3197
145120414529690
93.7500
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
55.5323
39.1709
95.3662
55.2807
4637196383130
96.7742
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
75.4613
91.1765
64.3669
39.3284
77575849470455
96.8085
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
40.8457
34.5247
50.0000
39.0585
454861479479439
91.6493
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
69.4825
55.4545
93.0108
50.6631
183147173139
69.2308
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
18.9437
10.5927
89.5161
64.6724
84709111139
69.2308
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
45.9790
97.3958
30.0926
23.2227
1875195453421
92.9360
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
80.6871
76.7630
85.0340
31.9444
13284021375242240
99.1736
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
94.3107
93.3144
95.3285
30.1733
656476533231
96.8750
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
60.2778
43.6644
97.2973
41.1531
25532928887
87.5000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
79.1206
94.1309
68.2390
28.6996
41726434202202
100.0000
eyeh-varpipeSNPtv*hetalt
99.3621
99.8852
98.8445
45.4641
870141064846
95.8333
eyeh-varpipeSNPtv*homalt
99.9630
99.9676
99.9583
19.9401
37700112237116515557
36.7742
eyeh-varpipeSNPtvHG002complexvar*
99.7847
99.8883
99.6813
20.5762
245880275235205752120
15.9574
eyeh-varpipeSNPtvHG002complexvarhet
99.6993
99.8812
99.5181
20.4147
15055517914248069071
10.2899
eyeh-varpipeSNPtvHG002complexvarhetalt
99.6700
99.6774
99.6626
29.8422
309135451211
91.6667
eyeh-varpipeSNPtvHG002complexvarhomalt
99.9220
99.9001
99.9440
20.4163
9501695891805038
76.0000
eyeh-varpipeSNPtvHG002compoundhet*
97.1567
99.0474
95.3368
45.3099
883885717635178
22.2222
eyeh-varpipeSNPtvHG002compoundhethet
92.5346
98.5876
87.1819
61.1401
460766188427744
15.8845
eyeh-varpipeSNPtvHG002compoundhethetalt
99.9052
99.8840
99.9265
25.0046
8611407932
66.6667
eyeh-varpipeSNPtvHG002compoundhethomalt
96.9051
99.4687
94.4704
53.4614
33701812137132
45.0704
eyeh-varpipeSNPtvdecoy*
0.0000
0.0000
100.0000
99.9914
00400
eyeh-varpipeSNPtvdecoyhet
0.0000
0.0000
100.0000
99.9939
00200
eyeh-varpipeSNPtvdecoyhetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvdecoyhomalt
0.0000
0.0000
100.0000
99.9851
00200
eyeh-varpipeSNPtvfunc_cds*
94.7737
99.9771
90.0850
32.1750
4370143434780
0.0000
eyeh-varpipeSNPtvfunc_cdshet
91.6856
99.9624
84.6746
34.5435
2656126414780
0.0000
eyeh-varpipeSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
67.8571
1001800
eyeh-varpipeSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
26.3664
17040168400
eyeh-varpipeSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
91.5507
98.2850
85.6800
74.8152
149026143023916
6.6946
eyeh-varpipeSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
88.9665
98.0847
81.3995
77.6081
973199192107
3.3333
eyeh-varpipeSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
91.7431
00900
eyeh-varpipeSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.5573
98.6641
94.5386
64.0244
5177502299
31.0345