PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32001-32050 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D1_5 | map_siren | * | 97.2391 | 97.2230 | 97.2552 | 80.6160 | 3431 | 98 | 3685 | 104 | 64 | 61.5385 | |
| eyeh-varpipe | INDEL | D1_5 | map_siren | het | 98.6360 | 98.8142 | 98.4583 | 78.5963 | 2250 | 27 | 2363 | 37 | 14 | 37.8378 | |
| eyeh-varpipe | INDEL | D1_5 | map_siren | hetalt | 50.2165 | 34.5238 | 92.0635 | 93.5910 | 29 | 55 | 58 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_siren | homalt | 96.9490 | 98.6301 | 95.3243 | 81.9616 | 1152 | 16 | 1264 | 62 | 47 | 75.8065 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | * | 97.2740 | 96.8268 | 97.7253 | 93.8542 | 1068 | 35 | 1117 | 26 | 21 | 80.7692 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | het | 99.2846 | 99.1329 | 99.4366 | 93.3025 | 686 | 6 | 706 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | hetalt | 60.7686 | 44.2308 | 97.0588 | 96.6403 | 23 | 29 | 33 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | homalt | 97.2973 | 100.0000 | 94.7368 | 94.2878 | 359 | 0 | 378 | 21 | 20 | 95.2381 | |
| eyeh-varpipe | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9794 | 1 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9761 | 1 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 100.0000 | 99.8771 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D1_5 | tech_badpromoters | * | 89.4737 | 89.4737 | 89.4737 | 42.4242 | 17 | 2 | 17 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D1_5 | tech_badpromoters | homalt | 90.0000 | 100.0000 | 81.8182 | 26.6667 | 9 | 0 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | * | * | 75.4633 | 71.7500 | 79.5820 | 47.2482 | 18721 | 7371 | 18658 | 4787 | 4643 | 96.9919 | |
| eyeh-varpipe | INDEL | D6_15 | * | het | 91.9882 | 92.1325 | 91.8444 | 46.7075 | 10680 | 912 | 10079 | 895 | 860 | 96.0894 | |
| eyeh-varpipe | INDEL | D6_15 | * | hetalt | 46.3037 | 30.5358 | 95.7427 | 56.1168 | 2496 | 5678 | 3036 | 135 | 128 | 94.8148 | |
| eyeh-varpipe | INDEL | D6_15 | * | homalt | 70.9562 | 87.6541 | 59.6022 | 44.0635 | 5545 | 781 | 5543 | 3757 | 3655 | 97.2851 | |
| eyeh-varpipe | INDEL | D6_15 | HG002complexvar | * | 80.0189 | 76.9521 | 83.3403 | 49.7370 | 4080 | 1222 | 3982 | 796 | 779 | 97.8643 | |
| eyeh-varpipe | INDEL | D6_15 | HG002complexvar | het | 89.4381 | 87.7564 | 91.1854 | 45.1275 | 2738 | 382 | 2100 | 203 | 195 | 96.0591 | |
| eyeh-varpipe | INDEL | D6_15 | HG002complexvar | hetalt | 51.3277 | 35.9329 | 89.8020 | 58.8427 | 364 | 649 | 907 | 103 | 102 | 99.0291 | |
| eyeh-varpipe | INDEL | D6_15 | HG002complexvar | homalt | 74.1328 | 83.6612 | 66.5529 | 48.6865 | 978 | 191 | 975 | 490 | 482 | 98.3673 | |
| eyeh-varpipe | INDEL | D6_15 | HG002compoundhet | * | 39.7758 | 35.3560 | 45.4585 | 32.6471 | 3193 | 5838 | 3138 | 3765 | 3754 | 99.7078 | |
| eyeh-varpipe | INDEL | D6_15 | HG002compoundhet | het | 60.1947 | 80.0234 | 48.2412 | 75.0000 | 685 | 171 | 96 | 103 | 100 | 97.0874 | |
| eyeh-varpipe | INDEL | D6_15 | HG002compoundhet | hetalt | 46.3719 | 30.5239 | 96.4480 | 28.8641 | 2488 | 5663 | 3014 | 111 | 110 | 99.0991 | |
| eyeh-varpipe | INDEL | D6_15 | HG002compoundhet | homalt | 1.5501 | 83.3333 | 0.7823 | 29.2688 | 20 | 4 | 28 | 3551 | 3544 | 99.8029 | |
| eyeh-varpipe | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.7758 | 1 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 100.0000 | 99.8073 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1525 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D6_15 | func_cds | * | 87.9743 | 83.7209 | 92.6829 | 46.7532 | 36 | 7 | 38 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | func_cds | het | 89.6552 | 89.6552 | 89.6552 | 38.2979 | 26 | 3 | 26 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | func_cds | hetalt | 66.6667 | 50.0000 | 100.0000 | 66.6667 | 1 | 1 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 58.3333 | 9 | 3 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 41.7793 | 36.0397 | 49.6933 | 42.7847 | 1416 | 2513 | 1458 | 1476 | 1368 | 92.6829 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 73.7801 | 62.4350 | 90.1639 | 54.2729 | 600 | 361 | 550 | 60 | 48 | 80.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 18.7138 | 10.4396 | 90.2235 | 66.4165 | 247 | 2119 | 323 | 35 | 30 | 85.7143 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 45.2624 | 94.5183 | 29.7558 | 27.9326 | 569 | 33 | 585 | 1381 | 1290 | 93.4106 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 59.5745 | 66.6667 | 53.8462 | 93.8095 | 4 | 2 | 7 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 88.8889 | 100.0000 | 80.0000 | 95.3271 | 3 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 54.5455 | 100.0000 | 37.5000 | 88.8889 | 1 | 0 | 3 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 70.9466 | 66.7041 | 75.7654 | 53.5142 | 10704 | 5343 | 10864 | 3475 | 3422 | 98.4748 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 90.2411 | 88.1901 | 92.3898 | 58.0809 | 4936 | 661 | 4589 | 378 | 364 | 96.2963 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 51.7828 | 35.4521 | 96.0081 | 54.3492 | 2415 | 4397 | 2862 | 119 | 117 | 98.3193 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 67.6237 | 92.1660 | 53.4032 | 48.7367 | 3353 | 285 | 3413 | 2978 | 2941 | 98.7576 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 66.0309 | 61.2472 | 71.6250 | 49.8874 | 10823 | 6848 | 10834 | 4292 | 4156 | 96.8313 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 88.2450 | 85.0667 | 91.6700 | 56.4134 | 4973 | 873 | 4523 | 411 | 383 | 93.1873 | |