PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30901-30950 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D6_15 | tech_badpromoters | * | 93.7500 | 88.2353 | 100.0000 | 52.9412 | 15 | 2 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | tech_badpromoters | het | 94.7368 | 90.0000 | 100.0000 | 50.0000 | 9 | 1 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.3333 | 6 | 0 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | * | * | 50.2841 | 36.9610 | 78.6262 | 37.5078 | 2357 | 4020 | 2358 | 641 | 639 | 99.6880 | |
| eyeh-varpipe | INDEL | I16_PLUS | * | het | 50.8662 | 38.8889 | 73.5049 | 38.7042 | 1057 | 1661 | 1057 | 381 | 381 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | * | hetalt | 18.8152 | 10.4862 | 91.4634 | 56.9177 | 220 | 1878 | 225 | 21 | 21 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | * | homalt | 74.9769 | 69.1864 | 81.8251 | 30.1275 | 1080 | 481 | 1076 | 239 | 237 | 99.1632 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002complexvar | * | 52.3530 | 38.8846 | 80.0955 | 45.7686 | 509 | 800 | 503 | 125 | 124 | 99.2000 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002complexvar | het | 50.6283 | 38.3459 | 74.4868 | 43.8221 | 255 | 410 | 254 | 87 | 87 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002complexvar | hetalt | 21.9016 | 12.5373 | 86.5385 | 70.1149 | 42 | 293 | 45 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002complexvar | homalt | 76.6428 | 68.6084 | 86.8085 | 37.6658 | 212 | 97 | 204 | 31 | 30 | 96.7742 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002compoundhet | * | 16.3932 | 10.4060 | 38.6054 | 37.9092 | 223 | 1920 | 227 | 361 | 360 | 99.7230 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002compoundhet | het | 2.3810 | 4.2553 | 1.6529 | 50.2058 | 2 | 45 | 2 | 119 | 119 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002compoundhet | hetalt | 18.8882 | 10.4634 | 96.9432 | 40.6736 | 219 | 1874 | 222 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002compoundhet | homalt | 2.4742 | 66.6667 | 1.2605 | 25.1572 | 2 | 1 | 3 | 235 | 234 | 99.5745 | |
| eyeh-varpipe | INDEL | I16_PLUS | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | func_cds | * | 66.6667 | 50.0000 | 100.0000 | 45.4545 | 6 | 6 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | func_cds | het | 61.5385 | 44.4444 | 100.0000 | 33.3333 | 4 | 5 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 11.8946 | 6.7961 | 47.6190 | 65.8537 | 14 | 192 | 20 | 22 | 20 | 90.9091 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 17.9104 | 10.5263 | 60.0000 | 67.7419 | 10 | 85 | 12 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 2.2831 | 1.1628 | 62.5000 | 77.7778 | 1 | 85 | 5 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 15.3846 | 12.0000 | 21.4286 | 44.0000 | 3 | 22 | 3 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 33.4409 | 22.7870 | 62.8044 | 47.2074 | 260 | 881 | 748 | 443 | 442 | 99.7743 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 37.7753 | 27.5229 | 60.2000 | 50.3476 | 120 | 316 | 301 | 199 | 199 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 21.7822 | 12.3499 | 92.2018 | 54.2977 | 72 | 511 | 201 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 53.8085 | 55.7377 | 52.0085 | 38.7306 | 68 | 54 | 246 | 227 | 226 | 99.5595 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 28.4209 | 18.3007 | 63.5810 | 52.0444 | 280 | 1250 | 522 | 299 | 297 | 99.3311 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 31.0297 | 20.4204 | 64.5833 | 56.8123 | 136 | 530 | 217 | 119 | 119 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 16.5137 | 9.1047 | 88.6667 | 60.4222 | 60 | 599 | 133 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 45.5773 | 40.9756 | 51.3433 | 39.6396 | 84 | 121 | 172 | 163 | 161 | 98.7730 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 21.6364 | 12.9630 | 65.3846 | 59.3750 | 14 | 94 | 17 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 24.4399 | 15.1515 | 63.1579 | 53.6585 | 10 | 56 | 12 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 10.2564 | 5.5556 | 66.6667 | 80.0000 | 1 | 17 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 21.4286 | 12.5000 | 75.0000 | 50.0000 | 3 | 21 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 33.5518 | 21.9101 | 71.5909 | 58.0952 | 39 | 139 | 63 | 25 | 25 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 31.0781 | 20.3704 | 65.5172 | 56.3910 | 22 | 86 | 38 | 20 | 20 | 100.0000 | |