PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30351-30400 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 39.2857 | 93.7639 | 0 | 0 | 11 | 17 | 14 | 82.3529 | |
| eyeh-varpipe | INDEL | C1_5 | HG002compoundhet | hetalt | 95.5961 | 100.0000 | 91.5638 | 80.0247 | 1 | 0 | 445 | 41 | 39 | 95.1220 | |
| eyeh-varpipe | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 22.4138 | 90.5537 | 0 | 0 | 13 | 45 | 34 | 75.5556 | |
| eyeh-varpipe | INDEL | C1_5 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | func_cds | * | 0.0000 | 0.0000 | 100.0000 | 95.0000 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | func_cds | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | func_cds | homalt | 0.0000 | 0.0000 | 100.0000 | 88.8889 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 40.0000 | 93.0830 | 0 | 0 | 28 | 42 | 14 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 54.5455 | 93.9227 | 0 | 0 | 12 | 10 | 2 | 20.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 94.5946 | 0 | 0 | 10 | 10 | 7 | 70.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 21.4286 | 90.0000 | 0 | 0 | 6 | 22 | 5 | 22.7273 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 76.0643 | 66.6667 | 88.5463 | 95.7295 | 2 | 1 | 804 | 104 | 78 | 75.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 78.6102 | 66.6667 | 95.7672 | 95.4210 | 2 | 1 | 362 | 16 | 4 | 25.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 82.8070 | 95.5800 | 0 | 0 | 236 | 49 | 46 | 93.8776 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 84.0816 | 96.2647 | 0 | 0 | 206 | 39 | 28 | 71.7949 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 69.0773 | 96.1442 | 0 | 1 | 277 | 124 | 70 | 56.4516 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 78.3217 | 96.5283 | 0 | 1 | 112 | 31 | 4 | 12.9032 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 70.6250 | 95.1427 | 0 | 0 | 113 | 47 | 42 | 89.3617 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 53.0612 | 96.7191 | 0 | 0 | 52 | 46 | 24 | 52.1739 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 63.6364 | 94.3590 | 0 | 0 | 14 | 8 | 2 | 25.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 53.8462 | 93.6585 | 0 | 0 | 7 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | * | * | * | 92.5779 | 91.3854 | 93.8021 | 63.3717 | 314861 | 29681 | 317111 | 20953 | 20114 | 95.9958 | |
| eyeh-varpipe | INDEL | * | * | het | 96.2526 | 95.5711 | 96.9439 | 53.1169 | 185535 | 8598 | 184936 | 5830 | 5344 | 91.6638 | |
| eyeh-varpipe | INDEL | * | * | hetalt | 52.2077 | 35.9353 | 95.4130 | 76.9125 | 9069 | 16168 | 11066 | 532 | 505 | 94.9248 | |
| eyeh-varpipe | INDEL | * | * | homalt | 92.5348 | 96.0734 | 89.2476 | 55.4307 | 120257 | 4915 | 121109 | 14591 | 14265 | 97.7657 | |
| eyeh-varpipe | INDEL | * | HG002complexvar | * | 93.6611 | 92.3263 | 95.0350 | 54.2841 | 71034 | 5904 | 71760 | 3749 | 3600 | 96.0256 | |
| eyeh-varpipe | INDEL | * | HG002complexvar | het | 95.5256 | 94.2569 | 96.8290 | 49.4429 | 43558 | 2654 | 42048 | 1377 | 1284 | 93.2462 | |
| eyeh-varpipe | INDEL | * | HG002complexvar | hetalt | 61.1209 | 45.5799 | 92.7426 | 76.1697 | 1686 | 2013 | 3642 | 285 | 277 | 97.1930 | |
| eyeh-varpipe | INDEL | * | HG002complexvar | homalt | 93.9842 | 95.4231 | 92.5880 | 51.8445 | 25790 | 1237 | 26070 | 2087 | 2039 | 97.7000 | |
| eyeh-varpipe | INDEL | * | HG002compoundhet | * | 44.6205 | 43.3845 | 45.9289 | 60.1662 | 12998 | 16962 | 12816 | 15088 | 14950 | 99.0854 | |
| eyeh-varpipe | INDEL | * | HG002compoundhet | het | 65.1467 | 80.9233 | 54.5181 | 69.0092 | 3313 | 781 | 1267 | 1057 | 968 | 91.5799 | |
| eyeh-varpipe | INDEL | * | HG002compoundhet | hetalt | 52.4540 | 35.9293 | 97.1234 | 60.7545 | 9047 | 16133 | 10973 | 325 | 315 | 96.9231 | |
| eyeh-varpipe | INDEL | * | HG002compoundhet | homalt | 7.7309 | 93.0029 | 4.0330 | 55.0612 | 638 | 48 | 576 | 13706 | 13667 | 99.7155 | |
| eyeh-varpipe | INDEL | * | decoy | * | 64.0777 | 50.0000 | 89.1892 | 99.8767 | 5 | 5 | 33 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | * | decoy | het | 63.4921 | 50.0000 | 86.9565 | 99.7259 | 3 | 3 | 20 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.7080 | 1 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | decoy | homalt | 48.8889 | 33.3333 | 91.6667 | 99.7340 | 1 | 2 | 11 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | func_cds | * | 95.4669 | 93.9326 | 97.0522 | 79.5644 | 418 | 27 | 428 | 13 | 11 | 84.6154 | |
| eyeh-varpipe | INDEL | * | func_cds | het | 93.8679 | 92.9907 | 94.7619 | 36.5559 | 199 | 15 | 199 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | * | func_cds | hetalt | 69.7674 | 60.0000 | 83.3333 | 72.7273 | 3 | 2 | 5 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | func_cds | homalt | 97.5248 | 95.5752 | 99.5556 | 29.9065 | 216 | 10 | 224 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 52.8397 | 49.0718 | 57.2344 | 61.3327 | 4943 | 5130 | 5716 | 4271 | 3848 | 90.0960 | |