PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
29451-29500 / 86044 show all
egarrison-hhgaSNPtimap_l100_m0_e0*
99.3678
98.9068
99.8331
66.9886
21533238215343620
55.5556
egarrison-hhgaSNPtimap_l100_m0_e0het
99.1363
98.4982
99.7827
69.5619
13773210137743014
46.6667
egarrison-hhgaSNPtimap_l100_m0_e0hetalt
88.8889
85.7143
92.3077
77.1930
1221211
100.0000
egarrison-hhgaSNPtimap_l100_m0_e0homalt
99.8003
99.6656
99.9355
61.1047
774826774855
100.0000
egarrison-hhgaSNPtimap_l100_m1_e0*
99.5648
99.2719
99.8594
62.6430
47582349475836731
46.2687
egarrison-hhgaSNPtimap_l100_m1_e0het
99.3929
98.9713
99.8181
63.9434
29634308296355418
33.3333
egarrison-hhgaSNPtimap_l100_m1_e0hetalt
94.7368
93.1034
96.4286
76.8595
2722711
100.0000
egarrison-hhgaSNPtimap_l100_m1_e0homalt
99.8579
99.7829
99.9331
60.2302
1792139179211212
100.0000
egarrison-hhgaSNPtimap_l100_m2_e0*
99.5647
99.2770
99.8541
64.5210
48607354486087132
45.0704
egarrison-hhgaSNPtimap_l100_m2_e0het
99.3933
98.9779
99.8123
65.4669
30309313303105718
31.5789
egarrison-hhgaSNPtimap_l100_m2_e0hetalt
94.9153
93.3333
96.5517
78.9855
2822811
100.0000
egarrison-hhgaSNPtimap_l100_m2_e0homalt
99.8579
99.7870
99.9289
62.7872
1827039182701313
100.0000
egarrison-hhgaSNPtimap_l100_m2_e1*
99.5683
99.2846
99.8537
64.5157
49131354491327232
44.4444
egarrison-hhgaSNPtimap_l100_m2_e1het
99.3984
98.9890
99.8111
65.4651
30647313306485818
31.0345
egarrison-hhgaSNPtimap_l100_m2_e1hetalt
95.0820
93.5484
96.6667
78.5714
2922911
100.0000
egarrison-hhgaSNPtimap_l100_m2_e1homalt
99.8593
99.7891
99.9296
62.7744
1845539184551313
100.0000
egarrison-hhgaSNPtimap_l125_m0_e0*
99.2437
98.7149
99.7782
73.5653
12598164125982814
50.0000
egarrison-hhgaSNPtimap_l125_m0_e0het
98.9821
98.2694
99.7053
75.9224
812014381202410
41.6667
egarrison-hhgaSNPtimap_l125_m0_e0hetalt
85.7143
75.0000
100.0000
85.0000
62600
egarrison-hhgaSNPtimap_l125_m0_e0homalt
99.7435
99.5769
99.9106
67.7962
447219447244
100.0000
egarrison-hhgaSNPtimap_l125_m1_e0*
99.4628
99.0932
99.8351
68.9921
29069266290694824
50.0000
egarrison-hhgaSNPtimap_l125_m1_e0het
99.2515
98.7299
99.7787
70.5410
18034232180344016
40.0000
egarrison-hhgaSNPtimap_l125_m1_e0hetalt
95.6522
91.6667
100.0000
75.2809
2222200
egarrison-hhgaSNPtimap_l125_m1_e0homalt
99.8187
99.7103
99.9274
66.0474
11013321101388
100.0000
egarrison-hhgaSNPtimap_l125_m2_e0*
99.4693
99.1110
99.8302
70.7438
29989269299895124
47.0588
egarrison-hhgaSNPtimap_l125_m2_e0het
99.2599
98.7550
99.7699
71.8619
18641235186414316
37.2093
egarrison-hhgaSNPtimap_l125_m2_e0hetalt
95.6522
91.6667
100.0000
79.2453
2222200
egarrison-hhgaSNPtimap_l125_m2_e0homalt
99.8237
99.7183
99.9294
68.6664
11326321132688
100.0000
egarrison-hhgaSNPtimap_l125_m2_e1*
99.4698
99.1135
99.8287
70.7805
30298271302985224
46.1538
egarrison-hhgaSNPtimap_l125_m2_e1het
99.2602
98.7583
99.7671
71.8965
18850237188504416
36.3636
egarrison-hhgaSNPtimap_l125_m2_e1hetalt
95.6522
91.6667
100.0000
79.4393
2222200
egarrison-hhgaSNPtimap_l125_m2_e1homalt
99.8253
99.7207
99.9300
68.7014
11426321142688
100.0000
egarrison-hhgaSNPtimap_l150_m0_e0*
99.1041
98.4989
99.7167
79.0350
774311877432210
45.4545
egarrison-hhgaSNPtimap_l150_m0_e0het
98.7730
97.9203
99.6406
81.1953
49911064991186
33.3333
egarrison-hhgaSNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.6250
30300
egarrison-hhgaSNPtimap_l150_m0_e0homalt
99.7098
99.5654
99.8547
73.4497
274912274944
100.0000
egarrison-hhgaSNPtimap_l150_m1_e0*
99.3657
98.9448
99.7902
73.6441
19504208195044120
48.7805
egarrison-hhgaSNPtimap_l150_m1_e0het
99.1299
98.5449
99.7219
75.0856
12190180121903413
38.2353
egarrison-hhgaSNPtimap_l150_m1_e0hetalt
92.8571
86.6667
100.0000
80.3030
1321300
egarrison-hhgaSNPtimap_l150_m1_e0homalt
99.7745
99.6451
99.9042
70.8007
730126730177
100.0000
egarrison-hhgaSNPtimap_l150_m2_e0*
99.3881
98.9811
99.7985
75.2011
20303209203034120
48.7805
egarrison-hhgaSNPtimap_l150_m2_e0het
99.1606
98.5948
99.7330
76.2545
12700181127003413
38.2353
egarrison-hhgaSNPtimap_l150_m2_e0hetalt
92.8571
86.6667
100.0000
83.5443
1321300
egarrison-hhgaSNPtimap_l150_m2_e0homalt
99.7831
99.6586
99.9079
73.1839
759026759077
100.0000
egarrison-hhgaSNPtimap_l150_m2_e1*
99.3895
98.9866
99.7957
75.2728
20513210205134220
47.6190
egarrison-hhgaSNPtimap_l150_m2_e1het
99.1616
98.6016
99.7280
76.3347
12833182128333513
37.1429
egarrison-hhgaSNPtimap_l150_m2_e1hetalt
92.8571
86.6667
100.0000
83.9506
1321300
egarrison-hhgaSNPtimap_l150_m2_e1homalt
99.7853
99.6620
99.9088
73.2343
766726766777
100.0000
egarrison-hhgaSNPtimap_l250_m0_e0*
98.2288
97.1533
99.3284
92.7300
133139133193
33.3333
egarrison-hhgaSNPtimap_l250_m0_e0het
97.7729
96.3597
99.2282
93.4065
9003490071
14.2857