PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29301-29350 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | * | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.8739 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m2_e1 | homalt | 99.7799 | 99.6449 | 99.9152 | 73.3597 | 11785 | 42 | 11785 | 10 | 10 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l250_m0_e0 | * | 98.0810 | 96.9555 | 99.2330 | 92.5099 | 2070 | 65 | 2070 | 16 | 6 | 37.5000 | |
| egarrison-hhga | SNP | * | map_l250_m0_e0 | het | 97.6415 | 96.2151 | 99.1108 | 92.9345 | 1449 | 57 | 1449 | 13 | 3 | 23.0769 | |
| egarrison-hhga | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | * | map_l250_m0_e0 | homalt | 99.1221 | 98.7281 | 99.5192 | 91.2532 | 621 | 8 | 621 | 3 | 3 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l250_m1_e0 | * | 98.6376 | 97.7430 | 99.5487 | 87.7148 | 7059 | 163 | 7059 | 32 | 15 | 46.8750 | |
| egarrison-hhga | SNP | * | map_l250_m1_e0 | het | 98.2228 | 97.0557 | 99.4184 | 88.3044 | 4615 | 140 | 4615 | 27 | 10 | 37.0370 | |
| egarrison-hhga | SNP | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.9184 | 2 | 2 | 2 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l250_m1_e0 | homalt | 99.4705 | 99.1474 | 99.7957 | 86.3912 | 2442 | 21 | 2442 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l250_m2_e0 | * | 98.7146 | 97.8821 | 99.5614 | 88.2472 | 7718 | 167 | 7718 | 34 | 16 | 47.0588 | |
| egarrison-hhga | SNP | * | map_l250_m2_e0 | het | 98.3259 | 97.2468 | 99.4291 | 88.5758 | 5051 | 143 | 5051 | 29 | 11 | 37.9310 | |
| egarrison-hhga | SNP | * | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 95.0820 | 3 | 2 | 3 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l250_m2_e0 | homalt | 99.4958 | 99.1809 | 99.8127 | 87.5461 | 2664 | 22 | 2664 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l250_m2_e1 | * | 98.7184 | 97.8841 | 99.5670 | 88.3214 | 7818 | 169 | 7818 | 34 | 16 | 47.0588 | |
| egarrison-hhga | SNP | * | map_l250_m2_e1 | het | 98.3289 | 97.2454 | 99.4367 | 88.6583 | 5119 | 145 | 5119 | 29 | 11 | 37.9310 | |
| egarrison-hhga | SNP | * | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 95.0820 | 3 | 2 | 3 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l250_m2_e1 | homalt | 99.5018 | 99.1906 | 99.8149 | 87.6004 | 2696 | 22 | 2696 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | * | map_siren | * | 99.6583 | 99.4385 | 99.8791 | 53.8224 | 145407 | 821 | 145408 | 176 | 78 | 44.3182 | |
| egarrison-hhga | SNP | * | map_siren | het | 99.5365 | 99.2384 | 99.8364 | 54.0342 | 90298 | 693 | 90299 | 148 | 53 | 35.8108 | |
| egarrison-hhga | SNP | * | map_siren | hetalt | 96.2025 | 93.8272 | 98.7013 | 75.7098 | 76 | 5 | 76 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_siren | homalt | 99.8639 | 99.7770 | 99.9510 | 53.4112 | 55033 | 123 | 55033 | 27 | 24 | 88.8889 | |
| egarrison-hhga | SNP | * | segdup | * | 99.6030 | 99.6793 | 99.5269 | 89.4388 | 27977 | 90 | 27977 | 133 | 40 | 30.0752 | |
| egarrison-hhga | SNP | * | segdup | het | 99.4921 | 99.5438 | 99.4404 | 89.6178 | 17238 | 79 | 17238 | 97 | 4 | 4.1237 | |
| egarrison-hhga | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8528 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | * | segdup | homalt | 99.7815 | 99.8976 | 99.6657 | 89.1087 | 10732 | 11 | 10732 | 36 | 36 | 100.0000 | |
| egarrison-hhga | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | * | tech_badpromoters | * | 99.3671 | 100.0000 | 98.7421 | 47.8689 | 157 | 0 | 157 | 2 | 0 | 0.0000 | |
| egarrison-hhga | SNP | * | tech_badpromoters | het | 98.7179 | 100.0000 | 97.4684 | 44.7552 | 77 | 0 | 77 | 2 | 0 | 0.0000 | |
| egarrison-hhga | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | SNP | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.6173 | 80 | 0 | 80 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | * | * | 99.9062 | 99.8498 | 99.9627 | 17.0848 | 2082379 | 3132 | 2082402 | 778 | 200 | 25.7069 | |
| egarrison-hhga | SNP | ti | * | het | 99.8877 | 99.8228 | 99.9527 | 17.2025 | 1279619 | 2272 | 1279622 | 606 | 80 | 13.2013 | |
| egarrison-hhga | SNP | ti | * | hetalt | 98.9708 | 99.1409 | 98.8014 | 49.0846 | 577 | 5 | 577 | 7 | 7 | 100.0000 | |
| egarrison-hhga | SNP | ti | * | homalt | 99.9365 | 99.8935 | 99.9794 | 16.8582 | 802183 | 855 | 802203 | 165 | 113 | 68.4848 | |
| egarrison-hhga | SNP | ti | HG002complexvar | * | 99.8425 | 99.7343 | 99.9509 | 17.5278 | 507085 | 1351 | 507107 | 249 | 148 | 59.4378 | |
| egarrison-hhga | SNP | ti | HG002complexvar | het | 99.8118 | 99.6651 | 99.9589 | 16.9554 | 313712 | 1054 | 313715 | 129 | 51 | 39.5349 | |
| egarrison-hhga | SNP | ti | HG002complexvar | hetalt | 98.5507 | 98.5507 | 98.5507 | 42.1788 | 204 | 3 | 204 | 3 | 3 | 100.0000 | |
| egarrison-hhga | SNP | ti | HG002complexvar | homalt | 99.8937 | 99.8480 | 99.9395 | 18.4037 | 193169 | 294 | 193188 | 117 | 94 | 80.3419 | |
| egarrison-hhga | SNP | ti | HG002compoundhet | * | 99.0004 | 98.5925 | 99.4116 | 34.5800 | 17232 | 246 | 17233 | 102 | 75 | 73.5294 | |
| egarrison-hhga | SNP | ti | HG002compoundhet | het | 98.7211 | 97.8643 | 99.5931 | 37.6968 | 9302 | 203 | 9300 | 38 | 21 | 55.2632 | |
| egarrison-hhga | SNP | ti | HG002compoundhet | hetalt | 99.5663 | 99.1364 | 100.0000 | 22.9530 | 574 | 5 | 574 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | HG002compoundhet | homalt | 99.3116 | 99.4861 | 99.1378 | 31.0451 | 7356 | 38 | 7359 | 64 | 54 | 84.3750 | |
| egarrison-hhga | SNP | ti | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | ti | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | ti | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||