PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29251-29300 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.6154 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l150_m2_e0 | homalt | 99.7670 | 99.6081 | 99.9263 | 73.5886 | 4067 | 16 | 4067 | 3 | 3 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | * | 99.3012 | 98.8437 | 99.7631 | 74.2719 | 11369 | 133 | 11369 | 27 | 12 | 44.4444 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | het | 99.0483 | 98.4349 | 99.6693 | 74.6001 | 7233 | 115 | 7233 | 24 | 9 | 37.5000 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.8739 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | homalt | 99.7698 | 99.6130 | 99.9272 | 73.5901 | 4118 | 16 | 4118 | 3 | 3 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l250_m0_e0 | * | 97.8160 | 96.6013 | 99.0617 | 92.0849 | 739 | 26 | 739 | 7 | 3 | 42.8571 | |
| egarrison-hhga | SNP | tv | map_l250_m0_e0 | het | 97.4268 | 95.9790 | 98.9189 | 91.9902 | 549 | 23 | 549 | 6 | 2 | 33.3333 | |
| egarrison-hhga | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | tv | map_l250_m0_e0 | homalt | 98.9583 | 98.4456 | 99.4764 | 92.2735 | 190 | 3 | 190 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l250_m1_e0 | * | 98.4351 | 97.4311 | 99.4601 | 86.8596 | 2579 | 68 | 2579 | 14 | 7 | 50.0000 | |
| egarrison-hhga | SNP | tv | map_l250_m1_e0 | het | 98.0159 | 96.7543 | 99.3107 | 87.0375 | 1729 | 58 | 1729 | 12 | 5 | 41.6667 | |
| egarrison-hhga | SNP | tv | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.9184 | 2 | 2 | 2 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l250_m1_e0 | homalt | 99.4138 | 99.0654 | 99.7647 | 86.4065 | 848 | 8 | 848 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e0 | * | 98.5111 | 97.5711 | 99.4694 | 87.5099 | 2812 | 70 | 2812 | 15 | 7 | 46.6667 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e0 | het | 98.0955 | 96.9072 | 99.3133 | 87.4569 | 1880 | 60 | 1880 | 13 | 5 | 38.4615 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 95.0820 | 3 | 2 | 3 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l250_m2_e0 | homalt | 99.4647 | 99.1462 | 99.7852 | 87.5551 | 929 | 8 | 929 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e1 | * | 98.5286 | 97.5995 | 99.4757 | 87.5868 | 2846 | 70 | 2846 | 15 | 7 | 46.6667 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e1 | het | 98.1200 | 96.9466 | 99.3222 | 87.5276 | 1905 | 60 | 1905 | 13 | 5 | 38.4615 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 95.0820 | 3 | 2 | 3 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l250_m2_e1 | homalt | 99.4698 | 99.1543 | 99.7872 | 87.6462 | 938 | 8 | 938 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_siren | * | 99.6246 | 99.3686 | 99.8818 | 55.8072 | 45640 | 290 | 45640 | 54 | 25 | 46.2963 | |
| egarrison-hhga | SNP | tv | map_siren | het | 99.4896 | 99.1331 | 99.8486 | 55.6665 | 28361 | 248 | 28361 | 43 | 15 | 34.8837 | |
| egarrison-hhga | SNP | tv | map_siren | hetalt | 96.2025 | 93.8272 | 98.7013 | 75.7098 | 76 | 5 | 76 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_siren | homalt | 99.8636 | 99.7854 | 99.9419 | 55.8765 | 17203 | 37 | 17203 | 10 | 9 | 90.0000 | |
| egarrison-hhga | SNP | tv | segdup | * | 99.5315 | 99.6015 | 99.4616 | 90.4428 | 8498 | 34 | 8498 | 46 | 15 | 32.6087 | |
| egarrison-hhga | SNP | tv | segdup | het | 99.4044 | 99.4326 | 99.3762 | 90.4305 | 5257 | 30 | 5257 | 33 | 2 | 6.0606 | |
| egarrison-hhga | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8528 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | segdup | homalt | 99.7379 | 99.8765 | 99.5996 | 90.3915 | 3234 | 4 | 3234 | 13 | 13 | 100.0000 | |
| egarrison-hhga | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | tv | tech_badpromoters | * | 98.6301 | 100.0000 | 97.2973 | 49.3151 | 72 | 0 | 72 | 2 | 0 | 0.0000 | |
| egarrison-hhga | SNP | tv | tech_badpromoters | het | 97.0588 | 100.0000 | 94.2857 | 41.6667 | 33 | 0 | 33 | 2 | 0 | 0.0000 | |
| egarrison-hhga | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | SNP | tv | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 54.6512 | 39 | 0 | 39 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8776 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m0_e0 | homalt | 99.6815 | 99.4864 | 99.8772 | 74.1921 | 4068 | 21 | 4068 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l150_m1_e0 | * | 99.3388 | 98.9023 | 99.7792 | 73.2772 | 30273 | 336 | 30273 | 67 | 32 | 47.7612 | |
| egarrison-hhga | SNP | * | map_l150_m1_e0 | het | 99.0911 | 98.4883 | 99.7013 | 74.4872 | 19024 | 292 | 19024 | 57 | 22 | 38.5965 | |
| egarrison-hhga | SNP | * | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 82.0000 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m1_e0 | homalt | 99.7690 | 99.6274 | 99.9110 | 70.9129 | 11231 | 42 | 11231 | 10 | 10 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l150_m2_e0 | * | 99.3568 | 98.9326 | 99.7847 | 74.8691 | 31512 | 340 | 31512 | 68 | 32 | 47.0588 | |
| egarrison-hhga | SNP | * | map_l150_m2_e0 | het | 99.1156 | 98.5298 | 99.7085 | 75.6800 | 19837 | 296 | 19837 | 58 | 22 | 37.9310 | |
| egarrison-hhga | SNP | * | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.6154 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m2_e0 | homalt | 99.7775 | 99.6410 | 99.9143 | 73.3265 | 11657 | 42 | 11657 | 10 | 10 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l150_m2_e1 | * | 99.3609 | 98.9413 | 99.7840 | 74.9205 | 31869 | 341 | 31869 | 69 | 32 | 46.3768 | |
| egarrison-hhga | SNP | * | map_l150_m2_e1 | het | 99.1207 | 98.5415 | 99.7068 | 75.7393 | 20066 | 297 | 20066 | 59 | 22 | 37.2881 | |