PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29001-29050 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D1_5 | * | * | 96.9873 | 96.8033 | 97.1720 | 57.4559 | 142054 | 4691 | 142118 | 4136 | 3666 | 88.6364 | |
| egarrison-hhga | INDEL | D1_5 | * | het | 97.6225 | 99.3251 | 95.9773 | 54.9367 | 86983 | 591 | 87418 | 3664 | 3399 | 92.7675 | |
| egarrison-hhga | INDEL | D1_5 | * | hetalt | 77.5745 | 63.8360 | 98.8480 | 70.3665 | 6540 | 3705 | 6178 | 72 | 64 | 88.8889 | |
| egarrison-hhga | INDEL | D1_5 | * | homalt | 99.1875 | 99.1927 | 99.1824 | 59.4207 | 48531 | 395 | 48522 | 400 | 203 | 50.7500 | |
| egarrison-hhga | INDEL | D1_5 | HG002complexvar | * | 97.4539 | 97.1695 | 97.7400 | 55.3894 | 31789 | 926 | 31787 | 735 | 582 | 79.1837 | |
| egarrison-hhga | INDEL | D1_5 | HG002complexvar | het | 97.8863 | 98.0978 | 97.6758 | 52.4481 | 20370 | 395 | 20424 | 486 | 392 | 80.6584 | |
| egarrison-hhga | INDEL | D1_5 | HG002complexvar | hetalt | 79.1212 | 67.7515 | 95.0766 | 77.6746 | 916 | 436 | 869 | 45 | 42 | 93.3333 | |
| egarrison-hhga | INDEL | D1_5 | HG002complexvar | homalt | 98.5958 | 99.1036 | 98.0931 | 56.9237 | 10503 | 95 | 10494 | 204 | 148 | 72.5490 | |
| egarrison-hhga | INDEL | D1_5 | HG002compoundhet | * | 69.0217 | 68.1406 | 69.9260 | 60.9500 | 8337 | 3898 | 8410 | 3617 | 3521 | 97.3459 | |
| egarrison-hhga | INDEL | D1_5 | HG002compoundhet | het | 51.9684 | 88.9468 | 36.7077 | 50.8341 | 1537 | 191 | 1969 | 3395 | 3320 | 97.7909 | |
| egarrison-hhga | INDEL | D1_5 | HG002compoundhet | hetalt | 77.6385 | 63.8117 | 99.1149 | 65.8609 | 6519 | 3697 | 6159 | 55 | 48 | 87.2727 | |
| egarrison-hhga | INDEL | D1_5 | HG002compoundhet | homalt | 76.1097 | 96.5636 | 62.8062 | 73.3847 | 281 | 10 | 282 | 167 | 153 | 91.6168 | |
| egarrison-hhga | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9518 | 3 | 1 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9511 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9464 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | func_cds | * | 99.6865 | 100.0000 | 99.3750 | 33.6100 | 159 | 0 | 159 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | func_cds | het | 99.4152 | 100.0000 | 98.8372 | 38.5714 | 85 | 0 | 85 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 26.0000 | 74 | 0 | 74 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 79.7819 | 78.2631 | 81.3608 | 56.9182 | 3118 | 866 | 3121 | 715 | 658 | 92.0280 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 79.5694 | 95.6738 | 68.1055 | 61.1370 | 1349 | 61 | 1420 | 665 | 621 | 93.3835 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 73.4050 | 58.5620 | 98.3268 | 40.8270 | 1067 | 755 | 999 | 17 | 15 | 88.2353 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.4183 | 93.3511 | 95.5102 | 59.6597 | 702 | 50 | 702 | 33 | 22 | 66.6667 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.3601 | 11 | 0 | 11 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.3127 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.6117 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 93.9659 | 93.6956 | 94.2379 | 71.6964 | 60369 | 4062 | 60447 | 3696 | 3375 | 91.3149 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.7746 | 98.8928 | 90.9856 | 70.5872 | 32868 | 368 | 33288 | 3298 | 3156 | 95.6944 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 77.4165 | 63.6080 | 98.8826 | 71.6925 | 5913 | 3383 | 5575 | 63 | 56 | 88.8889 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.5257 | 98.5798 | 98.4716 | 73.3734 | 21588 | 311 | 21584 | 335 | 163 | 48.6567 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.8726 | 86.3602 | 87.3912 | 57.0498 | 27124 | 4284 | 27204 | 3925 | 3577 | 91.1338 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 87.7692 | 97.8411 | 79.5775 | 59.2240 | 13460 | 297 | 13899 | 3567 | 3388 | 94.9818 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 74.9981 | 60.3703 | 98.9815 | 39.2947 | 5609 | 3682 | 5248 | 54 | 46 | 85.1852 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.3579 | 96.3517 | 96.3641 | 60.0124 | 8055 | 305 | 8057 | 304 | 143 | 47.0395 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.5379 | 95.4068 | 95.6693 | 67.9563 | 727 | 35 | 729 | 33 | 24 | 72.7273 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.9717 | 97.4713 | 94.5175 | 69.3960 | 424 | 11 | 431 | 25 | 17 | 68.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 80.5492 | 69.5652 | 95.6522 | 68.7075 | 48 | 21 | 44 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.2614 | 98.8372 | 97.6923 | 64.9123 | 255 | 3 | 254 | 6 | 5 | 83.3333 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.3932 | 10 | 0 | 10 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.3694 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 1 | 0 | 1 | 0 | 0 | ||