PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27851-27900 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.6190 | 96.4706 | 98.7952 | 90.8691 | 82 | 3 | 82 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m1_e0 | * | 97.9763 | 97.9079 | 98.0447 | 88.3293 | 702 | 15 | 702 | 14 | 4 | 28.5714 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m1_e0 | het | 97.5104 | 97.5104 | 97.5104 | 88.0782 | 470 | 12 | 470 | 12 | 2 | 16.6667 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5686 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.9011 | 98.6842 | 99.1189 | 87.9767 | 225 | 3 | 225 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e0 | * | 98.0984 | 98.0341 | 98.1627 | 88.9051 | 748 | 15 | 748 | 14 | 4 | 28.5714 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e0 | het | 97.6654 | 97.6654 | 97.6654 | 88.5803 | 502 | 12 | 502 | 12 | 2 | 16.6667 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9298 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9648 | 98.7603 | 99.1701 | 88.7331 | 239 | 3 | 239 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e1 | * | 98.1350 | 98.0720 | 98.1982 | 88.9000 | 763 | 15 | 763 | 14 | 4 | 28.5714 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e1 | het | 97.7011 | 97.7011 | 97.7011 | 88.5827 | 510 | 12 | 510 | 12 | 2 | 16.6667 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6245 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.9899 | 98.7903 | 99.1903 | 88.7266 | 245 | 3 | 245 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m0_e0 | * | 93.4783 | 93.4783 | 93.4783 | 97.4011 | 43 | 3 | 43 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m0_e0 | het | 92.5373 | 93.9394 | 91.1765 | 97.2313 | 31 | 2 | 31 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D1_5 | map_l250_m0_e0 | homalt | 96.0000 | 92.3077 | 100.0000 | 97.5709 | 12 | 1 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l250_m1_e0 | * | 97.0588 | 96.4912 | 97.6331 | 95.1156 | 165 | 6 | 165 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m1_e0 | het | 96.3964 | 96.3964 | 96.3964 | 95.2625 | 107 | 4 | 107 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2222 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l250_m1_e0 | homalt | 98.2143 | 96.4912 | 100.0000 | 94.5491 | 55 | 2 | 55 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | * | 97.2678 | 96.7391 | 97.8022 | 95.3842 | 178 | 6 | 178 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | het | 96.6942 | 96.6942 | 96.6942 | 95.4167 | 117 | 4 | 117 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6923 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 95.0554 | 58 | 2 | 58 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e1 | * | 97.2826 | 96.7568 | 97.8142 | 95.4658 | 179 | 6 | 179 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e1 | het | 96.7213 | 96.7213 | 96.7213 | 95.4647 | 118 | 4 | 118 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7941 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e1 | homalt | 98.3051 | 96.6667 | 100.0000 | 95.2066 | 58 | 2 | 58 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_siren | * | 98.6263 | 98.6682 | 98.5844 | 80.4104 | 3482 | 47 | 3482 | 50 | 22 | 44.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_siren | het | 98.6006 | 98.9899 | 98.2143 | 79.8047 | 2254 | 23 | 2255 | 41 | 14 | 34.1463 | |
| egarrison-hhga | INDEL | D1_5 | map_siren | hetalt | 87.4083 | 78.5714 | 98.4848 | 91.1409 | 66 | 18 | 65 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_siren | homalt | 99.4012 | 99.4863 | 99.3162 | 80.2231 | 1162 | 6 | 1162 | 8 | 7 | 87.5000 | |
| egarrison-hhga | INDEL | D1_5 | segdup | * | 97.7335 | 97.7335 | 97.7335 | 94.3200 | 1078 | 25 | 1078 | 25 | 22 | 88.0000 | |
| egarrison-hhga | INDEL | D1_5 | segdup | het | 98.1532 | 99.7110 | 96.6434 | 93.9982 | 690 | 2 | 691 | 24 | 21 | 87.5000 | |
| egarrison-hhga | INDEL | D1_5 | segdup | hetalt | 72.2591 | 57.6923 | 96.6667 | 96.9168 | 30 | 22 | 29 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | segdup | homalt | 99.8605 | 99.7214 | 100.0000 | 94.5201 | 358 | 1 | 358 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9935 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9896 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D1_5 | tech_badpromoters | * | 94.7368 | 94.7368 | 94.7368 | 45.7143 | 18 | 1 | 18 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | tech_badpromoters | het | 94.1176 | 100.0000 | 88.8889 | 50.0000 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | tech_badpromoters | hetalt | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 1 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | * | * | 86.6592 | 82.4007 | 91.3819 | 53.7350 | 21500 | 4592 | 21631 | 2040 | 1771 | 86.8137 | |
| egarrison-hhga | INDEL | D6_15 | * | het | 92.3399 | 97.9037 | 87.3745 | 56.6927 | 11349 | 243 | 11924 | 1723 | 1642 | 95.2989 | |
| egarrison-hhga | INDEL | D6_15 | * | hetalt | 65.0139 | 48.4952 | 98.5994 | 42.7885 | 3964 | 4210 | 3520 | 50 | 43 | 86.0000 | |
| egarrison-hhga | INDEL | D6_15 | * | homalt | 96.8232 | 97.8027 | 95.8630 | 51.8789 | 6187 | 139 | 6187 | 267 | 86 | 32.2097 | |
| egarrison-hhga | INDEL | D6_15 | HG002complexvar | * | 89.5440 | 86.4579 | 92.8586 | 57.3769 | 4584 | 718 | 4590 | 353 | 276 | 78.1870 | |