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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2501-2550 / 86044 show all
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
86.6885
80.3324
94.1368
55.4427
29071289185
27.7778
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
92.6984
90.4665
95.0431
49.8920
446474412312
52.1739
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
92.3314
91.1111
93.5849
51.5539
246242481712
70.5882
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
41.6667
0.0000
0.0000
57000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
94.6459
92.4171
96.9849
47.4934
1951619360
0.0000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
31.4802
22.9894
49.9162
51.5028
3031015298299239
79.9331
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
33.7398
28.1768
42.0398
49.5609
102260169233185
79.3991
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
11.3343
0.0000
0.0000
79618000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
55.0270
47.1042
66.1538
55.0691
1221371296654
81.8182
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
0.0000
100.0000
0.0000
00100
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
0.0000
100.0000
0.0000
00100
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
43.4211
35.2336
56.5657
54.1348
113120791120860639
74.3023
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
49.6401
47.9452
51.4593
46.5298
420456670632480
75.9494
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
16.9450
0.0000
0.0000
2741343000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
63.5445
60.9484
66.3717
63.9745
437280450228159
69.7368
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
49.8333
42.9384
59.3660
55.4700
8301103824564402
71.2766
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
57.9234
60.5313
55.5310
45.5422
319208502402297
73.8806
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
20.6568
0.0000
0.0000
195749000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
67.4506
68.3983
66.5289
66.7811
316146322162105
64.8148
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
51.7017
43.2260
64.3120
56.8434
175823091748970697
71.8557
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
57.4634
56.6917
58.2564
53.1385
7545761009723533
73.7206
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
16.7981
0.0000
0.0000
2771372000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
70.6515
66.8199
74.9493
62.1061
727361739247164
66.3968
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
51.5950
42.4685
65.7179
59.2998
2123287621011096789
71.9891
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
56.8293
53.5459
60.5416
56.3805
9748451252816596
73.0392
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
16.4164
0.0000
0.0000
3171614000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
70.6464
66.6133
75.1993
63.7444
832417849280193
68.9286
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
50.4202
43.0804
60.7748
52.4011
7721020753486332
68.3128
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
55.3043
53.2020
57.5796
52.8812
324285452333230
69.0691
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
19.7704
0.0000
0.0000
155629000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
69.6845
73.4336
66.2996
51.5475
293106301153102
66.6667
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
28.7100
20.4082
48.3974
46.2069
150585151161125
77.6398
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
30.5882
23.0769
45.3488
45.7413
39130789474
78.7234
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
9.1116
0.0000
0.0000
40399000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
53.9587
55.9055
52.1429
46.7681
7156736751
76.1194
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
79.3685
71.2644
89.5522
70.7424
62256073
42.8571
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
83.8725
78.8462
89.5833
67.1233
41114352
40.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
8.3333
0.0000
0.0000
111000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
88.1971
86.9565
89.4737
77.1084
2031721
50.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
49.6562
36.7647
76.4706
96.4620
25432687
87.5000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
48.2759
31.8182
100.0000
91.5730
14301500
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
09000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
64.7059
73.3333
57.8947
97.5734
1141187
87.5000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
51.7848
41.9187
67.7249
51.1628
402557384183140
76.5027
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
55.4070
49.8753
62.3188
47.9245
200201258156121
77.5641
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
22.5610
0.0000
0.0000
74254000
astatham-gatkINDEL***
99.3424
99.2404
99.4446
59.9126
341925261734178819091550
81.1943
astatham-gatkINDEL**het
99.5127
99.4973
99.5281
60.7701
193157976192779914573
62.6915