PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2451-2500 / 86044 show all
anovak-vgINDELC6_15tech_badpromotershet
0.0000
0.0000
0.0000
00000
anovak-vgINDELC6_15tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELC6_15tech_badpromotershomalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUS**
64.9199
56.1321
76.9701
52.6377
3808297637801131815
72.0601
anovak-vgINDELD16_PLUS*het
72.6101
70.2754
75.1054
49.0881
22209392495827601
72.6723
anovak-vgINDELD16_PLUS*hetalt
0.0000
16.4511
0.0000
0.0000
3181615000
anovak-vgINDELD16_PLUS*homalt
77.8556
75.0591
80.8685
58.6629
12704221285304214
70.3947
anovak-vgINDELD16_PLUSHG002complexvar*
63.7181
53.0736
79.7034
53.6711
872771860219154
70.3196
anovak-vgINDELD16_PLUSHG002complexvarhet
65.7371
54.8329
82.0546
48.1457
60750063113895
68.8406
anovak-vgINDELD16_PLUSHG002complexvarhetalt
0.0000
17.4089
0.0000
0.0000
43204000
anovak-vgINDELD16_PLUSHG002complexvarhomalt
75.3150
76.8166
73.8710
63.3570
222672298159
72.8395
anovak-vgINDELD16_PLUSHG002compoundhet*
28.7549
21.7001
42.6065
32.2197
5081833510687477
69.4323
anovak-vgINDELD16_PLUSHG002compoundhethet
47.7497
45.4321
50.3165
27.0208
184221477471319
67.7282
anovak-vgINDELD16_PLUSHG002compoundhethetalt
0.0000
16.4938
0.0000
0.0000
3181610000
anovak-vgINDELD16_PLUSHG002compoundhethomalt
22.5256
75.0000
13.2530
46.6809
6233216158
73.1481
anovak-vgINDELD16_PLUSdecoy*
66.6667
50.0000
100.0000
98.7603
33300
anovak-vgINDELD16_PLUSdecoyhet
66.6667
50.0000
100.0000
98.9848
22200
anovak-vgINDELD16_PLUSdecoyhetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSdecoyhomalt
66.6667
50.0000
100.0000
97.7778
11100
anovak-vgINDELD16_PLUSfunc_cds*
80.0000
66.6667
100.0000
60.0000
84800
anovak-vgINDELD16_PLUSfunc_cdshet
76.9231
62.5000
100.0000
64.2857
53500
anovak-vgINDELD16_PLUSfunc_cdshetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSfunc_cdshomalt
85.7143
75.0000
100.0000
50.0000
31300
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
37.1500
27.9605
55.3371
59.9550
5951533591477362
75.8910
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
40.5494
35.4887
47.2934
60.0683
236429332370282
76.2162
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
11.1795
0.0000
0.0000
109866000
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
59.4331
51.2295
70.7650
59.7360
25023825910780
74.7664
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
28.5714
25.0000
33.3333
94.4444
13121
50.0000
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
94.4444
10111
100.0000
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
94.4444
02010
0.0000
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
57.0334
48.7504
68.7072
56.9745
173618251706777550
70.7851
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
62.4653
60.2952
64.7975
51.6129
8175381040565411
72.7434
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
20.0155
0.0000
0.0000
2591035000
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
74.0703
72.3684
75.8542
64.2217
660252666212139
65.5660
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
51.5950
42.4685
65.7179
59.2998
2123287621011096789
71.9891
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
56.8293
53.5459
60.5416
56.3805
9748451252816596
73.0392
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
16.4164
0.0000
0.0000
3171614000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
70.6464
66.6133
75.1993
63.7444
832417849280193
68.9286
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
60.9623
54.4271
69.2810
72.5314
2091752129451
54.2553
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
55.0938
52.7363
57.6720
74.5283
106951098046
57.5000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
18.1818
0.0000
0.0000
29000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
70.4500
58.7209
88.0342
68.5484
10171103145
35.7143
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
25.0000
0.0000
96.2264
13021
50.0000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
0.0000
97.1429
10011
100.0000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
94.4444
02010
0.0000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
81.1540
77.3058
85.4054
60.1508
63718763210859
54.6296
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
77.8733
76.5766
79.2148
62.9281
3401043439054
60.0000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
36.8421
0.0000
0.0000
712000