PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24201-24250 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.9476 | 94.0760 | 100.0000 | 38.5189 | 1064 | 67 | 1071 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4862 | 100.0000 | 98.9777 | 68.5196 | 1065 | 0 | 1065 | 11 | 11 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.3668 | 91.8216 | 99.1968 | 76.6417 | 247 | 22 | 247 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6218 | 92.1569 | 97.2222 | 94.1368 | 47 | 4 | 35 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.6731 | 91.7051 | 100.0000 | 35.4740 | 199 | 18 | 211 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 98.4000 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.9445 | 98.1905 | 99.7101 | 62.5272 | 1031 | 19 | 1032 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.3592 | 98.9362 | 99.7859 | 69.6359 | 465 | 5 | 466 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.7124 | 95.5272 | 100.0000 | 30.1402 | 299 | 14 | 299 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6269 | 100.0000 | 99.2565 | 66.2060 | 267 | 0 | 267 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 62.6866 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 91.8919 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 8.3333 | 22 | 1 | 22 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I1_5 | map_l100_m0_e0 | * | 97.3193 | 96.8692 | 97.7737 | 89.6605 | 526 | 17 | 527 | 12 | 2 | 16.6667 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m0_e0 | het | 95.9671 | 94.7853 | 97.1787 | 91.9444 | 309 | 17 | 310 | 9 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.2840 | 100.0000 | 98.5782 | 81.2278 | 208 | 0 | 208 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m1_e0 | * | 97.7372 | 96.7140 | 98.7823 | 87.5119 | 1295 | 44 | 1298 | 16 | 4 | 25.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m1_e0 | het | 96.5955 | 94.8520 | 98.4043 | 89.8378 | 737 | 40 | 740 | 12 | 1 | 8.3333 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 88.4507 | 41 | 3 | 41 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.5188 | 99.8069 | 99.2322 | 81.1709 | 517 | 1 | 517 | 4 | 3 | 75.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e0 | * | 97.7479 | 96.7105 | 98.8077 | 88.3990 | 1323 | 45 | 1326 | 16 | 4 | 25.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e0 | het | 96.5990 | 94.8298 | 98.4355 | 90.5728 | 752 | 41 | 755 | 12 | 1 | 8.3333 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 89.3782 | 41 | 3 | 41 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.5305 | 99.8117 | 99.2509 | 82.4688 | 530 | 1 | 530 | 4 | 3 | 75.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e1 | * | 97.7178 | 96.6308 | 98.8296 | 88.4427 | 1348 | 47 | 1351 | 16 | 4 | 25.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e1 | het | 96.5415 | 94.6914 | 98.4655 | 90.6122 | 767 | 43 | 770 | 12 | 1 | 8.3333 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 89.3401 | 42 | 3 | 42 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.5383 | 99.8148 | 99.2634 | 82.5064 | 539 | 1 | 539 | 4 | 3 | 75.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m0_e0 | * | 96.9502 | 97.4194 | 96.4856 | 92.5352 | 302 | 8 | 302 | 11 | 1 | 9.0909 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m0_e0 | het | 95.5844 | 95.8333 | 95.3368 | 94.0906 | 184 | 8 | 184 | 9 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.7447 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l125_m0_e0 | homalt | 99.1304 | 100.0000 | 98.2759 | 86.0744 | 114 | 0 | 114 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m1_e0 | * | 97.3838 | 96.3855 | 98.4029 | 90.0233 | 800 | 30 | 801 | 13 | 2 | 15.3846 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m1_e0 | het | 95.8095 | 94.0329 | 97.6546 | 92.0238 | 457 | 29 | 458 | 11 | 1 | 9.0909 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0612 | 17 | 0 | 17 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5420 | 99.6942 | 99.3902 | 83.8741 | 326 | 1 | 326 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e0 | * | 97.4066 | 96.3827 | 98.4524 | 90.8257 | 826 | 31 | 827 | 13 | 2 | 15.3846 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e0 | het | 95.7972 | 93.9638 | 97.7035 | 92.7237 | 467 | 30 | 468 | 11 | 1 | 9.0909 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.2143 | 19 | 0 | 19 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5608 | 99.7067 | 99.4152 | 85.0850 | 340 | 1 | 340 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e1 | * | 97.3861 | 96.3218 | 98.4742 | 90.8974 | 838 | 32 | 839 | 13 | 2 | 15.3846 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e1 | het | 95.7853 | 93.8976 | 97.7505 | 92.7437 | 477 | 31 | 478 | 11 | 1 | 9.0909 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 19 | 0 | 19 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5633 | 99.7085 | 99.4186 | 85.2740 | 342 | 1 | 342 | 2 | 1 | 50.0000 | |