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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 479 480 481 482 483 484 485 486 487 ... 1720 1721 » 24101-24150 / 86044 show all
ckim-vqsr	INDEL	I16_PLUS	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	INDEL	I16_PLUS	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	INDEL	I16_PLUS	tech_badpromoters	*	100.0000	100.0000	100.0000	73.3333	4	0	4	0	0
ckim-vqsr	INDEL	I16_PLUS	tech_badpromoters	het	100.0000	100.0000	100.0000	75.0000	2	0	2	0	0
ckim-vqsr	INDEL	I16_PLUS	tech_badpromoters	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	INDEL	I16_PLUS	tech_badpromoters	homalt	100.0000	100.0000	100.0000	66.6667	2	0	2	0	0
ckim-vqsr	INDEL	I1_5	*	*	99.3579	99.0515	99.6662	59.3791	149235	1429	149282	500	397	79.4000
ckim-vqsr	INDEL	I1_5	*	het	99.5998	99.5116	99.6881	61.9903	78655	386	78634	246	145	58.9431
ckim-vqsr	INDEL	I1_5	*	hetalt	95.5907	91.5945	99.9516	60.1444	10254	941	10316	5	5	100.0000
ckim-vqsr	INDEL	I1_5	*	homalt	99.7099	99.8312	99.5890	55.2277	60326	102	60332	249	247	99.1968
ckim-vqsr	INDEL	I1_5	HG002complexvar	*	99.3737	98.9030	99.8489	56.8918	32997	366	33042	50	41	82.0000
ckim-vqsr	INDEL	I1_5	HG002complexvar	het	99.6583	99.4392	99.8784	58.1585	18087	102	18064	22	13	59.0909
ckim-vqsr	INDEL	I1_5	HG002complexvar	hetalt	92.1493	85.6315	99.7409	68.7323	1478	248	1540	4	4	100.0000
ckim-vqsr	INDEL	I1_5	HG002complexvar	homalt	99.8514	99.8810	99.8217	52.9334	13432	16	13438	24	24	100.0000
ckim-vqsr	INDEL	I1_5	HG002compoundhet	*	94.7676	92.2629	97.4120	66.1892	11400	956	11405	303	301	99.3399
ckim-vqsr	INDEL	I1_5	HG002compoundhet	het	94.8823	98.1176	91.8536	86.7262	834	16	778	69	67	97.1014
ckim-vqsr	INDEL	I1_5	HG002compoundhet	hetalt	95.5975	91.5988	99.9612	55.8418	10238	939	10299	4	4	100.0000
ckim-vqsr	INDEL	I1_5	HG002compoundhet	homalt	73.9572	99.6960	58.7814	88.6470	328	1	328	230	230	100.0000
ckim-vqsr	INDEL	I1_5	decoy	*		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	INDEL	I1_5	decoy	het		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	INDEL	I1_5	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	INDEL	I1_5	decoy	homalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	INDEL	I1_5	func_cds	*	99.4505	100.0000	98.9071	47.8632	180	0	181	2	0	0.0000
ckim-vqsr	INDEL	I1_5	func_cds	het	98.3607	100.0000	96.7742	64.7727	59	0	60	2	0	0.0000
ckim-vqsr	INDEL	I1_5	func_cds	hetalt	100.0000	100.0000	100.0000	0.0000	2	0	2	0	0
ckim-vqsr	INDEL	I1_5	func_cds	homalt	100.0000	100.0000	100.0000	31.2139	119	0	119	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.1514	90.4452	98.1743	66.8941	1666	176	1667	31	27	87.0968
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	97.0443	95.9215	98.1938	78.8174	635	27	598	11	7	63.6364
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	91.2201	83.9465	99.8737	37.5887	753	144	791	1	1	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.8621	98.2332	93.6027	69.8477	278	5	278	19	19	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	99.8670	1	0	1	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	96.1538	1	0	1	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.2521	96.8864	99.6568	72.9143	15092	485	15100	52	45	86.5385
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4572	99.2298	99.6856	78.8294	6055	47	6025	19	12	63.1579
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.1910	92.7080	99.9459	61.2682	5505	433	5543	3	3	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5070	99.8586	99.1578	72.7530	3532	5	3532	30	30	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.0024	96.5790	99.4683	68.2096	15527	550	15528	83	69	83.1325
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0199	98.6449	99.3978	76.9388	6333	87	6272	38	24	63.1579
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.1530	92.6221	99.9638	35.0611	5461	435	5523	2	2	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.0580	99.2555	98.8612	71.4717	3733	28	3733	43	43	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.5020	96.0317	99.0180	65.9610	605	25	605	6	5	83.3333
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	98.2405	96.8208	99.7024	70.0000	335	11	335	1	0	0.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	91.6129	84.5238	100.0000	53.8961	71	13	71	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.5149	99.5000	97.5490	60.8445	199	1	199	5	5	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	99.8621	1	0	1	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	95.8333	1	0	1	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0

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