PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2351-2400 / 86044 show all
anovak-vgSNPtitech_badpromotershetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtitech_badpromotershomalt
94.9679
92.6829
97.3684
29.6296
3833711
100.0000
anovak-vgSNPtv**
98.3366
98.3717
98.3016
24.5602
95390815790951566164416526
39.6934
anovak-vgSNPtv*het
97.9352
98.2070
97.6649
27.4537
58109510609580225138734566
32.9129
anovak-vgSNPtv*hetalt
0.0000
14.4661
0.0000
0.0000
126745000
anovak-vgSNPtv*homalt
99.0679
98.8237
99.3132
19.4559
372687443637134125681960
76.3240
anovak-vgSNPtvHG002complexvar*
97.7258
97.1262
98.3329
22.6263
239081707423558939942964
74.2113
anovak-vgSNPtvHG002complexvarhet
97.4369
96.9012
97.9786
22.5474
146063467114434729782196
73.7408
anovak-vgSNPtvHG002complexvarhetalt
0.0000
15.8065
0.0000
0.0000
49261000
anovak-vgSNPtvHG002complexvarhomalt
98.3199
97.7479
98.8987
22.7520
929692142912421016768
75.5906
anovak-vgSNPtvHG002compoundhet*
74.6577
75.2101
74.1133
50.0629
67112212706324671646
66.7207
anovak-vgSNPtvHG002compoundhethet
77.7767
79.7346
75.9127
53.8008
3726947434613791030
74.6918
anovak-vgSNPtvHG002compoundhethetalt
0.0000
14.6172
0.0000
0.0000
126736000
anovak-vgSNPtvHG002compoundhethomalt
77.3553
84.3861
71.4060
43.1411
285952927171088616
56.6176
anovak-vgSNPtvdecoy*
0.0000
0.0000
99.9988
00011
100.0000
anovak-vgSNPtvdecoyhet
0.0000
0.0000
99.9986
00011
100.0000
anovak-vgSNPtvdecoyhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtvdecoyhomalt
0.0000
100.0000
00000
anovak-vgSNPtvfunc_cds*
98.2741
97.7580
98.7957
36.4158
42739842665232
61.5385
anovak-vgSNPtvfunc_cdshet
97.9570
97.3654
98.5557
42.0612
25877025933821
55.2632
anovak-vgSNPtvfunc_cdshetalt
0.0000
30.0000
0.0000
0.0000
37000
anovak-vgSNPtvfunc_cdshomalt
98.9685
98.7676
99.1701
25.0222
16832116731411
78.5714
anovak-vgSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
91.3470
92.5462
90.1786
71.2135
1403113141415461
39.6104
anovak-vgSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
89.1362
91.0282
87.3213
73.7422
9038991613346
34.5865
anovak-vgSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.6861
95.4198
95.9538
64.2562
500244982115
71.4286
anovak-vgSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
anovak-vgSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
anovak-vgSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
anovak-vgSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.4923
97.2577
95.7388
64.3143
26919759275901228588
47.8827
anovak-vgSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
95.8647
96.7839
94.9628
65.9014
1700356517476927381
41.1003
anovak-vgSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
23.0769
0.0000
0.0000
310000
anovak-vgSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.6409
98.1777
97.1099
61.1163
991318410114301207
68.7708
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
89.3755
92.9518
86.0642
79.3543
135441027138092236557
24.9106
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
86.2248
91.8756
81.2289
81.5160
839174286461998399
19.9700
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
33.3333
0.0000
0.0000
510000
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.2600
94.9290
95.5934
73.1707
51482755163238158
66.3866
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
96.0448
95.6587
96.4340
58.7351
12785812714725
53.1915
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
95.4177
95.2047
95.6316
62.5883
814418103717
45.9459
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
97.1662
96.4657
97.8769
49.3548
46417461108
80.0000
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
97.5318
97.5161
97.5474
64.9131
21205421085324
45.2830
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
97.2183
97.1882
97.2484
66.9538
13483913433814
36.8421
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.1478
98.2188
98.0769
60.6061
772147651510
66.6667