PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2301-2350 / 86044 show all
anovak-vgSNPtimap_l125_m2_e1*
81.5574
87.0097
76.7480
75.9636
2659839712637679911774
22.2000
anovak-vgSNPtimap_l125_m2_e1het
77.5988
89.9303
68.2413
78.1425
1716519221704679331721
21.6942
anovak-vgSNPtimap_l125_m2_e1hetalt
0.0000
33.3333
0.0000
0.0000
816000
anovak-vgSNPtimap_l125_m2_e1homalt
90.0123
82.2569
99.3822
67.2869
9425203393305853
91.3793
anovak-vgSNPtimap_l150_m0_e0*
77.7546
81.7199
74.1564
85.3644
6424143763732221611
27.5101
anovak-vgSNPtimap_l150_m0_e0het
74.8246
85.7367
66.3765
86.9328
437072743472202593
26.9301
anovak-vgSNPtimap_l150_m0_e0hetalt
0.0000
66.6667
0.0000
0.0000
21000
anovak-vgSNPtimap_l150_m0_e0homalt
84.9295
74.3209
99.0709
76.2265
205270920261918
94.7368
anovak-vgSNPtimap_l150_m1_e0*
79.4593
85.7346
74.0400
78.6204
1690028121675658751329
22.6213
anovak-vgSNPtimap_l150_m1_e0het
75.5864
89.6281
65.3485
80.5450
1108712831100658361295
22.1899
anovak-vgSNPtimap_l150_m1_e0hetalt
0.0000
26.6667
0.0000
0.0000
411000
anovak-vgSNPtimap_l150_m1_e0homalt
88.1795
79.2821
99.3263
69.9803
5809151857503934
87.1795
anovak-vgSNPtimap_l150_m2_e0*
79.7989
85.9302
74.4843
79.9053
1762628861747759871363
22.7660
anovak-vgSNPtimap_l150_m2_e0het
75.9641
89.7213
65.8649
81.6317
1155713241147359461327
22.3175
anovak-vgSNPtimap_l150_m2_e0hetalt
0.0000
26.6667
0.0000
0.0000
411000
anovak-vgSNPtimap_l150_m2_e0homalt
88.3955
79.6350
99.3218
72.4413
6065155160044136
87.8049
anovak-vgSNPtimap_l150_m2_e1*
79.8681
86.0107
74.5445
79.9452
1782428991767360351369
22.6843
anovak-vgSNPtimap_l150_m2_e1het
76.0299
89.7810
65.9316
81.6800
1168513301160059941333
22.2389
anovak-vgSNPtimap_l150_m2_e1hetalt
0.0000
26.6667
0.0000
0.0000
411000
anovak-vgSNPtimap_l150_m2_e1homalt
88.4680
79.7478
99.3294
72.4334
6135155860734136
87.8049
anovak-vgSNPtimap_l250_m0_e0*
72.4774
77.4453
68.1085
95.7045
10613091055494111
22.4696
anovak-vgSNPtimap_l250_m0_e0het
69.1155
80.6210
60.4839
96.0595
753181750490108
22.0408
anovak-vgSNPtimap_l250_m0_e0hetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtimap_l250_m0_e0homalt
82.3486
70.6422
98.7055
93.2724
30812830543
75.0000
anovak-vgSNPtimap_l250_m1_e0*
74.8997
81.6117
69.2079
91.2986
373784237221656368
22.2222
anovak-vgSNPtimap_l250_m1_e0het
71.0849
85.8491
60.6538
92.0278
254842025421649363
22.0133
anovak-vgSNPtimap_l250_m1_e0hetalt
0.0000
25.0000
0.0000
0.0000
13000
anovak-vgSNPtimap_l250_m1_e0homalt
84.7951
73.9266
99.4103
87.1481
1188419118075
71.4286
anovak-vgSNPtimap_l250_m2_e0*
75.7617
82.2684
70.2088
91.5692
412088841031741394
22.6307
anovak-vgSNPtimap_l250_m2_e0het
72.1503
86.5704
61.8482
92.2282
281743728111734389
22.4337
anovak-vgSNPtimap_l250_m2_e0hetalt
0.0000
20.0000
0.0000
0.0000
14000
anovak-vgSNPtimap_l250_m2_e0homalt
85.1522
74.4425
99.4611
88.0122
1302447129275
71.4286
anovak-vgSNPtimap_l250_m2_e1*
75.8245
82.3089
70.2872
91.6096
417889841611759398
22.6265
anovak-vgSNPtimap_l250_m2_e1het
72.2384
86.6323
61.9461
92.2704
285844128521752393
22.4315
anovak-vgSNPtimap_l250_m2_e1hetalt
0.0000
20.0000
0.0000
0.0000
14000
anovak-vgSNPtimap_l250_m2_e1homalt
85.1502
74.4357
99.4681
88.0298
1319453130975
71.4286
anovak-vgSNPtimap_siren*
88.3716
90.3532
86.4749
58.5181
90674968189812140473559
25.3364
anovak-vgSNPtimap_sirenhet
85.3428
91.0279
80.3260
62.0963
56785559756323137953334
24.1682
anovak-vgSNPtimap_sirenhetalt
0.0000
29.8246
0.0000
0.0000
1740000
anovak-vgSNPtimap_sirenhomalt
94.0329
89.3343
99.2531
48.3941
33872404433489252225
89.2857
anovak-vgSNPtisegdup*
97.8325
97.8809
97.7842
91.7442
1912341419020431163
37.8190
anovak-vgSNPtisegduphet
97.2381
97.4480
97.0290
93.2429
117233071165935790
25.2101
anovak-vgSNPtisegduphetalt
0.0000
0.0000
0.0000
02000
anovak-vgSNPtisegduphomalt
98.8024
98.6009
99.0047
87.1313
740010573617473
98.6486
anovak-vgSNPtisegdupwithalt*
0.0000
100.0000
00000
anovak-vgSNPtisegdupwithalthet
0.0000
100.0000
00000
anovak-vgSNPtisegdupwithalthetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtisegdupwithalthomalt
0.0000
100.0000
00000
anovak-vgSNPtitech_badpromoters*
89.2841
83.5294
95.8904
38.1356
71147033
100.0000
anovak-vgSNPtitech_badpromotershet
83.5443
75.0000
94.2857
45.3125
33113322
100.0000