PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22951-23000 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.9880 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m1_e0 | * | 94.8837 | 96.2264 | 93.5780 | 97.2825 | 102 | 4 | 102 | 7 | 1 | 14.2857 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m1_e0 | het | 91.8033 | 93.3333 | 90.3226 | 98.0000 | 56 | 4 | 56 | 6 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8947 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l250_m1_e0 | homalt | 98.8764 | 100.0000 | 97.7778 | 94.4853 | 44 | 0 | 44 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e0 | * | 94.7368 | 95.5752 | 93.9130 | 97.5385 | 108 | 5 | 108 | 7 | 1 | 14.2857 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e0 | het | 91.7293 | 92.4242 | 91.0448 | 98.1295 | 61 | 5 | 61 | 6 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3051 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e0 | homalt | 98.9011 | 100.0000 | 97.8261 | 95.2675 | 45 | 0 | 45 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e1 | * | 94.7826 | 95.6140 | 93.9655 | 97.5904 | 109 | 5 | 109 | 7 | 1 | 14.2857 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e1 | het | 91.7293 | 92.4242 | 91.0448 | 98.1892 | 61 | 5 | 61 | 6 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3333 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e1 | homalt | 98.9247 | 100.0000 | 97.8723 | 95.2716 | 46 | 0 | 46 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_siren | * | 98.0317 | 96.9052 | 99.1848 | 83.6671 | 2912 | 93 | 2920 | 24 | 8 | 33.3333 | |
| ckim-vqsr | INDEL | I1_5 | map_siren | het | 97.0962 | 95.4194 | 98.8329 | 85.9291 | 1604 | 77 | 1609 | 19 | 5 | 26.3158 | |
| ckim-vqsr | INDEL | I1_5 | map_siren | hetalt | 95.3271 | 91.0714 | 100.0000 | 86.8047 | 102 | 10 | 102 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_siren | homalt | 99.5465 | 99.5050 | 99.5881 | 78.6343 | 1206 | 6 | 1209 | 5 | 3 | 60.0000 | |
| ckim-vqsr | INDEL | I1_5 | segdup | * | 99.0079 | 98.8669 | 99.1493 | 95.7156 | 1047 | 12 | 1049 | 9 | 2 | 22.2222 | |
| ckim-vqsr | INDEL | I1_5 | segdup | het | 98.7001 | 98.6989 | 98.7013 | 96.8242 | 531 | 7 | 532 | 7 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 95.8106 | 45 | 3 | 46 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.8593 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 54.1667 | 22 | 0 | 22 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | * | * | 97.6524 | 96.7691 | 98.5520 | 52.9508 | 24021 | 802 | 24026 | 353 | 331 | 93.7677 | |
| ckim-vqsr | INDEL | I6_15 | * | het | 99.0039 | 98.6943 | 99.3155 | 60.3259 | 9902 | 131 | 9866 | 68 | 49 | 72.0588 | |
| ckim-vqsr | INDEL | I6_15 | * | hetalt | 95.9384 | 92.2582 | 99.9244 | 35.7201 | 7889 | 662 | 7930 | 6 | 5 | 83.3333 | |
| ckim-vqsr | INDEL | I6_15 | * | homalt | 97.7408 | 99.8557 | 95.7136 | 54.8957 | 6230 | 9 | 6230 | 279 | 277 | 99.2832 | |
| ckim-vqsr | INDEL | I6_15 | HG002complexvar | * | 98.1251 | 97.1828 | 99.0859 | 57.0293 | 4657 | 135 | 4661 | 43 | 42 | 97.6744 | |
| ckim-vqsr | INDEL | I6_15 | HG002complexvar | het | 99.2942 | 98.8110 | 99.7821 | 59.6661 | 2327 | 28 | 2290 | 5 | 4 | 80.0000 | |
| ckim-vqsr | INDEL | I6_15 | HG002complexvar | hetalt | 95.4701 | 91.3328 | 100.0000 | 52.5604 | 1117 | 106 | 1158 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | HG002complexvar | homalt | 98.4178 | 99.9176 | 96.9624 | 55.5753 | 1213 | 1 | 1213 | 38 | 38 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | HG002compoundhet | * | 94.2580 | 92.3997 | 96.1926 | 36.2881 | 8109 | 667 | 8110 | 321 | 319 | 99.3769 | |
| ckim-vqsr | INDEL | I6_15 | HG002compoundhet | het | 86.6987 | 97.5962 | 77.9904 | 84.7889 | 203 | 5 | 163 | 46 | 45 | 97.8261 | |
| ckim-vqsr | INDEL | I6_15 | HG002compoundhet | hetalt | 95.9547 | 92.2455 | 99.9747 | 28.2465 | 7875 | 662 | 7916 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | HG002compoundhet | homalt | 18.5075 | 100.0000 | 10.1974 | 63.1068 | 31 | 0 | 31 | 273 | 272 | 99.6337 | |
| ckim-vqsr | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 41.0959 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 44.1860 | 24 | 0 | 24 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |