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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
20201-20250 / 86044 show all
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
93.8949
90.4986
97.5560
73.6447
962101958248
33.3333
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
94.6735
92.3896
97.0732
71.9306
60750597186
33.3333
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
89.1445
83.7838
95.2381
81.2500
3164022
100.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
92.9649
87.8049
98.7692
75.2098
3244532140
0.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
83.4511
77.1464
90.8779
45.5977
18605511853186163
87.6344
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
81.2534
85.2901
77.5815
56.2165
632109571165144
87.2727
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
84.2141
73.5864
98.4298
33.7451
95034110031615
93.7500
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
83.9902
73.3509
98.2394
46.3138
27810127954
80.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
01000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
01000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
93.2644
90.8623
95.7970
33.1527
18714188218667819734
89.6215
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.3436
96.3164
90.5489
40.3596
71122726879718641
89.2758
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
92.6853
87.1155
99.0159
25.1484
7052104372447268
94.4444
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
93.8528
88.9193
99.3658
31.1088
455056745442925
86.2069
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
94.3680
92.4804
96.3342
31.9134
16886137316845641574
89.5476
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
94.4844
97.2451
91.8762
38.9766
64951846322559498
89.0877
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
94.0526
89.4976
99.0961
23.7208
611071762495754
94.7368
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
94.5133
90.0694
99.4185
29.9723
428147242742522
88.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
93.1958
90.6831
95.8516
40.5987
20177207320125871757
86.9116
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
93.2809
95.5574
91.1103
49.1422
80233737779759657
86.5613
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
92.5582
86.9571
98.9306
27.1355
7107106673087975
94.9367
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
93.8012
88.8400
99.3492
39.7743
504763450383325
75.7576
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
92.6629
89.7351
95.7882
48.3290
281843224281101236977
79.0453
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.5242
92.9345
92.1175
55.9701
12785972124461065828
77.7465
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
91.7362
85.8358
98.5078
31.2346
797513168252125116
92.8000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
93.7961
88.8038
99.3832
46.4455
742493674124633
71.7391
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
93.9157
91.6952
96.2464
33.3267
22502203822436875753
86.0571
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
94.1010
95.3685
92.8667
39.9701
99254829699745638
85.6376
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
93.1476
88.3677
98.4741
26.6190
608580162609790
92.7835
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
94.2777
89.5819
99.4931
26.8704
649275564773325
75.7576
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
72.8440
62.9842
86.3636
38.2927
4392584376965
94.2029
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
65.9384
80.0000
56.0811
49.8305
10827836561
93.8462
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
76.2995
61.9145
99.3921
30.0000
30418732722
100.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
54.0000
38.0282
93.1034
47.2727
27442722
100.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
98.9120
98.2491
99.5839
53.4969
249154442489010467
64.4231
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
98.9925
98.5647
99.4241
53.5139
14558212145018448
57.1429
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
95.1367
94.4039
95.8810
72.5157
388234191818
100.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.9528
97.9466
99.9799
52.0162
9969209997021
50.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
72.7273
100.0000
57.1429
99.9868
10432
66.6667
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
72.7273
100.0000
57.1429
99.7676
10432
66.6667
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
95.8927
93.7179
98.1709
38.9030
1112974611110207127
61.3527
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
95.8906
94.5652
97.2537
40.0019
63513656268177104
58.7571
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
93.1495
88.0107
98.9255
35.6682
131417913811514
93.3333
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
96.9627
94.4899
99.5685
38.0503
34642023461159
60.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
82.8342
75.6494
91.5271
45.0163
9323009298662
72.0930
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200het
78.2202
78.4416
78.0000
61.1973
302832737755
71.4286