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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 396 397 398 399 400 401 402 403 404 ... 1720 1721 » 19951-20000 / 86044 show all
ckim-gatk	INDEL	I16_PLUS	map_l250_m2_e1	homalt		0.0000		100.0000	0	0	0	0	0
ckim-gatk	INDEL	I16_PLUS	map_siren	*	96.5778	97.6744	95.5056	93.0031	84	2	85	4	0	0.0000
ckim-gatk	INDEL	I16_PLUS	map_siren	het	95.0495	97.9592	92.3077	92.5926	48	1	48	4	0	0.0000
ckim-gatk	INDEL	I16_PLUS	map_siren	hetalt	100.0000	100.0000	100.0000	84.9558	16	0	17	0	0
ckim-gatk	INDEL	I16_PLUS	map_siren	homalt	97.5610	95.2381	100.0000	95.6236	20	1	20	0	0
ckim-gatk	INDEL	I16_PLUS	segdup	*	97.8723	97.8723	97.8723	96.4635	46	1	46	1	0	0.0000
ckim-gatk	INDEL	I16_PLUS	segdup	het	97.8723	95.8333	100.0000	97.1429	23	1	23	0	0
ckim-gatk	INDEL	I16_PLUS	segdup	hetalt	100.0000	100.0000	100.0000	97.1429	4	0	4	0	0
ckim-gatk	INDEL	I16_PLUS	segdup	homalt	97.4359	100.0000	95.0000	94.7917	19	0	19	1	0	0.0000
ckim-gatk	INDEL	I16_PLUS	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
ckim-gatk	INDEL	I16_PLUS	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
ckim-gatk	INDEL	I16_PLUS	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-gatk	INDEL	I16_PLUS	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
ckim-gatk	INDEL	I16_PLUS	tech_badpromoters	*	100.0000	100.0000	100.0000	73.3333	4	0	4	0	0
ckim-gatk	INDEL	I16_PLUS	tech_badpromoters	het	100.0000	100.0000	100.0000	75.0000	2	0	2	0	0
ckim-gatk	INDEL	I16_PLUS	tech_badpromoters	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-gatk	INDEL	I16_PLUS	tech_badpromoters	homalt	100.0000	100.0000	100.0000	66.6667	2	0	2	0	0
ckim-gatk	INDEL	I1_5	*	*	99.3427	99.1491	99.5371	59.3239	149382	1282	149430	695	401	57.6978
ckim-gatk	INDEL	I1_5	*	het	99.5633	99.6774	99.4495	61.8943	78786	255	78766	436	147	33.7156
ckim-gatk	INDEL	I1_5	*	hetalt	95.6301	91.6749	99.9419	60.1212	10263	932	10325	6	5	83.3333
ckim-gatk	INDEL	I1_5	*	homalt	99.7125	99.8428	99.5825	55.2232	60333	95	60339	253	249	98.4190
ckim-gatk	INDEL	I1_5	HG002complexvar	*	99.4404	99.0498	99.8341	56.8511	33046	317	33092	55	41	74.5455
ckim-gatk	INDEL	I1_5	HG002complexvar	het	99.7716	99.6866	99.8566	58.0913	18132	57	18110	26	13	50.0000
ckim-gatk	INDEL	I1_5	HG002complexvar	hetalt	92.1829	85.6895	99.7411	68.7184	1479	247	1541	4	4	100.0000
ckim-gatk	INDEL	I1_5	HG002complexvar	homalt	99.8588	99.9033	99.8143	52.9260	13435	13	13441	25	24	96.0000
ckim-gatk	INDEL	I1_5	HG002compoundhet	*	94.8213	92.3843	97.3904	66.1548	11415	941	11420	306	304	99.3464
ckim-gatk	INDEL	I1_5	HG002compoundhet	het	95.1264	98.8235	91.6959	86.6176	840	10	784	71	69	97.1831
ckim-gatk	INDEL	I1_5	HG002compoundhet	hetalt	95.6413	91.6793	99.9612	55.8202	10247	930	10308	4	4	100.0000
ckim-gatk	INDEL	I1_5	HG002compoundhet	homalt	73.8739	99.6960	58.6762	88.6290	328	1	328	231	231	100.0000
ckim-gatk	INDEL	I1_5	decoy	*		0.0000		100.0000	0	0	0	0	0
ckim-gatk	INDEL	I1_5	decoy	het		0.0000		100.0000	0	0	0	0	0
ckim-gatk	INDEL	I1_5	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-gatk	INDEL	I1_5	decoy	homalt		0.0000		100.0000	0	0	0	0	0
ckim-gatk	INDEL	I1_5	func_cds	*	99.1781	100.0000	98.3696	47.7273	180	0	181	3	0	0.0000
ckim-gatk	INDEL	I1_5	func_cds	het	97.5610	100.0000	95.2381	64.4068	59	0	60	3	0	0.0000
ckim-gatk	INDEL	I1_5	func_cds	hetalt	100.0000	100.0000	100.0000	0.0000	2	0	2	0	0
ckim-gatk	INDEL	I1_5	func_cds	homalt	100.0000	100.0000	100.0000	31.2139	119	0	119	0	0
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.1912	90.6623	98.0059	66.8030	1670	172	1671	34	28	82.3529
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	97.2012	96.5257	97.8862	78.6532	639	23	602	13	7	53.8462
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	91.2201	83.9465	99.8737	37.5887	753	144	791	1	1	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.6971	98.2332	93.2886	69.7769	278	5	278	20	20	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	99.8670	1	0	1	0	0
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	96.1538	1	0	1	0	0
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.2509	96.9956	99.5391	72.8687	15109	468	15117	70	47	67.1429
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4251	99.4428	99.4073	78.7466	6068	34	6038	36	13	36.1111
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.2182	92.7585	99.9459	61.2554	5508	430	5546	3	3	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5071	99.8869	99.1302	72.7419	3533	4	3533	31	31	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.0263	96.6909	99.3990	68.1693	15545	532	15546	94	71	75.5319

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