PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
18851-18900 / 86044 show all
ckim-gatkINDELI6_15*het
98.9455
98.8239
99.0674
60.2345
991511898799352
55.9140
ckim-gatkINDELI6_15*hetalt
95.9700
92.3167
99.9244
35.7056
7894657793565
83.3333
ckim-gatkINDELI6_15*homalt
97.7332
99.8557
95.6989
54.8919
623096230280278
99.2857
ckim-gatkINDELI6_15HG002complexvar*
98.1470
97.2454
99.0654
57.0085
466013246644443
97.7273
ckim-gatkINDELI6_15HG002complexvarhet
99.3586
98.9384
99.7824
59.6346
233025229354
80.0000
ckim-gatkINDELI6_15HG002complexvarhetalt
95.4701
91.3328
100.0000
52.5604
1117106115800
ckim-gatkINDELI6_15HG002complexvarhomalt
98.3779
99.9176
96.8850
55.5556
1213112133939
100.0000
ckim-gatkINDELI6_15HG002compoundhet*
94.2778
92.4567
96.1721
36.2689
81146628115323321
99.3808
ckim-gatkINDELI6_15HG002compoundhethet
86.2400
97.5962
77.2512
84.6657
20351634847
97.9167
ckim-gatkINDELI6_15HG002compoundhethetalt
95.9864
92.3041
99.9748
28.2337
7880657792122
100.0000
ckim-gatkINDELI6_15HG002compoundhethomalt
18.5075
100.0000
10.1974
63.1068
31031273272
99.6337
ckim-gatkINDELI6_15decoy*
0.0000
100.0000
00000
ckim-gatkINDELI6_15decoyhet
0.0000
100.0000
00000
ckim-gatkINDELI6_15decoyhetalt
0.0000
100.0000
00000
ckim-gatkINDELI6_15decoyhomalt
0.0000
100.0000
00000
ckim-gatkINDELI6_15func_cds*
97.6744
97.6744
97.6744
41.0959
4214211
100.0000
ckim-gatkINDELI6_15func_cdshet
100.0000
100.0000
100.0000
44.1860
2402400
ckim-gatkINDELI6_15func_cdshetalt
85.7143
75.0000
100.0000
0.0000
31300
ckim-gatkINDELI6_15func_cdshomalt
96.7742
100.0000
93.7500
40.7407
1501511
100.0000
ckim-gatkINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.6130
91.3876
98.0745
66.7520
764727641513
86.6667
ckim-gatkINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
96.6346
95.5466
97.7477
80.8621
2361121753
60.0000
ckim-gatkINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.8037
88.4906
99.7955
45.1178
4696148811
100.0000
ckim-gatkINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
92.9134
100.0000
86.7647
76.7123
5905999
100.0000
ckim-gatkINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-gatkINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-gatkINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-gatkINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.5789
95.9353
99.2797
63.8316
509821651003730
81.0811
ckim-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0504
98.6372
99.4670
77.6637
152021149382
25.0000
ckim-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.7267
93.7500
99.8985
40.2385
2925195295433
100.0000
ckim-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.0480
100.0000
96.1708
73.2150
65306532625
96.1538
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.3551
95.7767
98.9864
63.1106
605526760556249
79.0323
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5365
98.0213
99.0571
76.1911
1932391891186
33.3333
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.6181
93.5621
99.8804
39.4313
3299227334044
100.0000
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.5725
99.8788
95.3704
71.6070
82418244039
97.5000
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
94.4606
91.0112
98.1818
72.3618
1621616233
100.0000
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.1132
96.2963
100.0000
78.8043
7837800
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
88.0734
78.6885
100.0000
52.4752
48134800
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
96.0000
100.0000
92.3077
69.5312
3603633
100.0000
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.0047
98.3051
99.7143
69.9828
348634911
100.0000
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4318
98.8701
100.0000
74.3402
175217500
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
97.5904
95.2941
100.0000
52.8736
8148200
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.4595
100.0000
98.9247
70.0000
9209211
100.0000
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5851
99.1736
100.0000
69.2994
240224100
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
72.3982
122012200
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
98.0392
96.1538
100.0000
54.0541
5025100