PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
101-150 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 72.6300 | 71.4689 | 73.8294 | 38.5577 | 4812 | 1921 | 5913 | 2096 | 1645 | 78.4828 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 75.1577 | 77.7747 | 72.7110 | 36.3946 | 2845 | 813 | 4074 | 1529 | 1142 | 74.6893 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 38.7866 | 0.0000 | 0.0000 | 358 | 565 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 75.5916 | 74.7677 | 76.4339 | 43.0667 | 1609 | 543 | 1839 | 567 | 503 | 88.7125 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 26.7404 | 22.0721 | 33.9130 | 42.0655 | 49 | 173 | 78 | 152 | 131 | 86.1842 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 38.1138 | 46.0000 | 32.5359 | 39.0671 | 23 | 27 | 68 | 141 | 121 | 85.8156 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 13.6000 | 0.0000 | 0.0000 | 17 | 108 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 27.3141 | 19.1489 | 47.6190 | 61.1111 | 9 | 38 | 10 | 11 | 10 | 90.9091 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | * | map_l100_m0_e0 | * | 72.6539 | 73.0006 | 72.3105 | 87.1262 | 1141 | 422 | 1183 | 453 | 264 | 58.2781 | |
| anovak-vg | INDEL | * | map_l100_m0_e0 | het | 71.5575 | 68.7561 | 74.5968 | 89.0375 | 702 | 319 | 740 | 252 | 75 | 29.7619 | |
| anovak-vg | INDEL | * | map_l100_m0_e0 | hetalt | 0.0000 | 36.3636 | 0.0000 | 0.0000 | 12 | 21 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l100_m0_e0 | homalt | 75.5926 | 83.8900 | 68.7888 | 82.3948 | 427 | 82 | 443 | 201 | 189 | 94.0299 | |
| anovak-vg | INDEL | * | map_l100_m1_e0 | * | 72.2354 | 72.6157 | 71.8590 | 84.0163 | 2604 | 982 | 2671 | 1046 | 628 | 60.0382 | |
| anovak-vg | INDEL | * | map_l100_m1_e0 | het | 70.6925 | 67.2036 | 74.5635 | 86.2608 | 1502 | 733 | 1580 | 539 | 154 | 28.5714 | |
| anovak-vg | INDEL | * | map_l100_m1_e0 | hetalt | 0.0000 | 25.8065 | 0.0000 | 0.0000 | 32 | 92 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l100_m1_e0 | homalt | 76.5861 | 87.2046 | 68.2728 | 79.5887 | 1070 | 157 | 1091 | 507 | 474 | 93.4911 | |
| anovak-vg | INDEL | * | map_l100_m2_e0 | * | 72.4393 | 72.7593 | 72.1222 | 84.8313 | 2687 | 1006 | 2763 | 1068 | 640 | 59.9251 | |
| anovak-vg | INDEL | * | map_l100_m2_e0 | het | 70.9065 | 67.2735 | 74.9542 | 86.8513 | 1552 | 755 | 1637 | 547 | 155 | 28.3364 | |
| anovak-vg | INDEL | * | map_l100_m2_e0 | hetalt | 0.0000 | 26.4000 | 0.0000 | 0.0000 | 33 | 92 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l100_m2_e0 | homalt | 76.7170 | 87.3910 | 68.3667 | 80.9419 | 1102 | 159 | 1126 | 521 | 485 | 93.0902 | |
| anovak-vg | INDEL | * | map_l100_m2_e1 | * | 72.2208 | 72.4441 | 71.9990 | 84.9008 | 2721 | 1035 | 2795 | 1087 | 655 | 60.2576 | |
| anovak-vg | INDEL | * | map_l100_m2_e1 | het | 70.6838 | 66.8374 | 75.0000 | 86.9385 | 1566 | 777 | 1653 | 551 | 156 | 28.3122 | |
| anovak-vg | INDEL | * | map_l100_m2_e1 | hetalt | 0.0000 | 26.5152 | 0.0000 | 0.0000 | 35 | 97 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l100_m2_e1 | homalt | 76.5374 | 87.4317 | 68.0572 | 81.0009 | 1120 | 161 | 1142 | 536 | 499 | 93.0970 | |
| anovak-vg | INDEL | * | map_l125_m0_e0 | * | 71.3287 | 72.2222 | 70.4570 | 90.6359 | 637 | 245 | 663 | 278 | 156 | 56.1151 | |
| anovak-vg | INDEL | * | map_l125_m0_e0 | het | 70.2289 | 68.8245 | 71.6918 | 91.8286 | 404 | 183 | 428 | 169 | 55 | 32.5444 | |
| anovak-vg | INDEL | * | map_l125_m0_e0 | hetalt | 0.0000 | 36.3636 | 0.0000 | 0.0000 | 4 | 7 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l125_m0_e0 | homalt | 73.9644 | 80.6338 | 68.3140 | 87.4544 | 229 | 55 | 235 | 109 | 101 | 92.6606 | |
| anovak-vg | INDEL | * | map_l125_m1_e0 | * | 72.5033 | 74.1813 | 70.8995 | 87.0946 | 1563 | 544 | 1608 | 660 | 372 | 56.3636 | |
| anovak-vg | INDEL | * | map_l125_m1_e0 | het | 70.6166 | 68.5393 | 72.8236 | 88.9382 | 915 | 420 | 962 | 359 | 95 | 26.4624 | |
| anovak-vg | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 37.5000 | 0.0000 | 0.0000 | 15 | 25 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l125_m1_e0 | homalt | 76.2677 | 86.4754 | 68.2154 | 83.1764 | 633 | 99 | 646 | 301 | 277 | 92.0266 | |
| anovak-vg | INDEL | * | map_l125_m2_e0 | * | 72.8494 | 74.4991 | 71.2712 | 87.8407 | 1636 | 560 | 1682 | 678 | 383 | 56.4897 | |
| anovak-vg | INDEL | * | map_l125_m2_e0 | het | 71.0853 | 69.0870 | 73.2026 | 89.4523 | 961 | 430 | 1008 | 369 | 100 | 27.1003 | |
| anovak-vg | INDEL | * | map_l125_m2_e0 | hetalt | 0.0000 | 35.7143 | 0.0000 | 0.0000 | 15 | 27 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l125_m2_e0 | homalt | 76.4959 | 86.5007 | 68.5656 | 84.5197 | 660 | 103 | 674 | 309 | 283 | 91.5858 | |
| anovak-vg | INDEL | * | map_l125_m2_e1 | * | 72.6951 | 74.3371 | 71.1241 | 87.8885 | 1654 | 571 | 1702 | 691 | 393 | 56.8741 | |
| anovak-vg | INDEL | * | map_l125_m2_e1 | het | 70.9268 | 68.8210 | 73.1655 | 89.5197 | 969 | 439 | 1017 | 373 | 101 | 27.0777 | |
| anovak-vg | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 34.8837 | 0.0000 | 0.0000 | 15 | 28 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l125_m2_e1 | homalt | 76.3517 | 86.5633 | 68.2951 | 84.5478 | 670 | 104 | 685 | 318 | 292 | 91.8239 | |
| anovak-vg | INDEL | * | map_l150_m0_e0 | * | 70.9648 | 71.4008 | 70.5341 | 93.5272 | 367 | 147 | 383 | 160 | 88 | 55.0000 | |
| anovak-vg | INDEL | * | map_l150_m0_e0 | het | 69.8552 | 68.9150 | 70.8215 | 94.2917 | 235 | 106 | 250 | 103 | 35 | 33.9806 | |