PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13751-13800 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | ti | map_l250_m2_e1 | hetalt | 60.0000 | 60.0000 | 60.0000 | 83.8710 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m2_e1 | homalt | 82.2049 | 80.4740 | 84.0118 | 87.5404 | 1426 | 346 | 1424 | 271 | 196 | 72.3247 | |
| ciseli-custom | SNP | ti | map_siren | * | 90.7989 | 89.0429 | 92.6255 | 57.4504 | 89359 | 10996 | 89077 | 7092 | 2003 | 28.2431 | |
| ciseli-custom | SNP | ti | map_siren | het | 88.8574 | 85.8902 | 92.0370 | 60.6835 | 53580 | 8802 | 53468 | 4626 | 118 | 2.5508 | |
| ciseli-custom | SNP | ti | map_siren | hetalt | 81.1321 | 75.4386 | 87.7551 | 63.1579 | 43 | 14 | 43 | 6 | 6 | 100.0000 | |
| ciseli-custom | SNP | ti | map_siren | homalt | 93.8892 | 94.2504 | 93.5307 | 51.3255 | 35736 | 2180 | 35566 | 2460 | 1879 | 76.3821 | |
| ciseli-custom | SNP | ti | segdup | * | 97.2840 | 98.8381 | 95.7779 | 90.5362 | 19310 | 227 | 19237 | 848 | 118 | 13.9151 | |
| ciseli-custom | SNP | ti | segdup | het | 96.4948 | 98.3957 | 94.6659 | 91.6122 | 11837 | 193 | 11802 | 665 | 19 | 2.8571 | |
| ciseli-custom | SNP | ti | segdup | hetalt | 80.0000 | 100.0000 | 66.6667 | 96.5909 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | segdup | homalt | 98.5690 | 99.5470 | 97.6100 | 88.0096 | 7471 | 34 | 7433 | 182 | 99 | 54.3956 | |
| ciseli-custom | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | ti | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | ti | tech_badpromoters | * | 86.2240 | 92.9412 | 80.4124 | 43.9306 | 79 | 6 | 78 | 19 | 1 | 5.2632 | |
| ciseli-custom | SNP | ti | tech_badpromoters | het | 79.2079 | 90.9091 | 70.1754 | 39.3617 | 40 | 4 | 40 | 17 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | ti | tech_badpromoters | homalt | 95.0609 | 95.1220 | 95.0000 | 49.3671 | 39 | 2 | 38 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | tv | * | * | 96.5740 | 98.6920 | 94.5451 | 25.2127 | 957014 | 12684 | 954909 | 55095 | 4019 | 7.2947 | |
| ciseli-custom | SNP | tv | * | het | 95.4085 | 98.2395 | 92.7361 | 26.7935 | 581287 | 10417 | 580583 | 45476 | 409 | 0.8994 | |
| ciseli-custom | SNP | tv | * | hetalt | 87.9067 | 82.2044 | 94.4591 | 39.6977 | 716 | 155 | 716 | 42 | 19 | 45.2381 | |
| ciseli-custom | SNP | tv | * | homalt | 98.4608 | 99.4400 | 97.5007 | 22.4395 | 375011 | 2112 | 373610 | 9577 | 3591 | 37.4961 | |
| ciseli-custom | SNP | tv | HG002complexvar | * | 94.9824 | 96.7736 | 93.2564 | 24.4003 | 238213 | 7942 | 236085 | 17072 | 2875 | 16.8404 | |
| ciseli-custom | SNP | tv | HG002complexvar | het | 94.7007 | 95.5637 | 93.8531 | 24.0959 | 144047 | 6687 | 143323 | 9387 | 273 | 2.9083 | |
| ciseli-custom | SNP | tv | HG002complexvar | hetalt | 70.4724 | 57.7419 | 90.4040 | 39.8176 | 179 | 131 | 179 | 19 | 9 | 47.3684 | |
| ciseli-custom | SNP | tv | HG002complexvar | homalt | 95.4763 | 98.8182 | 92.3530 | 24.8215 | 93987 | 1124 | 92583 | 7666 | 2593 | 33.8247 | |
| ciseli-custom | SNP | tv | HG002compoundhet | * | 66.9226 | 84.5568 | 55.3744 | 51.6390 | 7545 | 1378 | 7573 | 6103 | 515 | 8.4385 | |
| ciseli-custom | SNP | tv | HG002compoundhet | het | 56.8474 | 77.9585 | 44.7336 | 53.7648 | 3643 | 1030 | 3678 | 4544 | 89 | 1.9586 | |
| ciseli-custom | SNP | tv | HG002compoundhet | hetalt | 90.1141 | 82.4826 | 99.3017 | 17.9840 | 711 | 151 | 711 | 5 | 2 | 40.0000 | |
| ciseli-custom | SNP | tv | HG002compoundhet | homalt | 78.4375 | 94.1854 | 67.2014 | 50.7638 | 3191 | 197 | 3184 | 1554 | 424 | 27.2844 | |
| ciseli-custom | SNP | tv | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | tv | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | tv | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | tv | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | tv | func_cds | * | 95.2555 | 99.4738 | 91.3804 | 30.2616 | 4348 | 23 | 4336 | 409 | 11 | 2.6895 | |
| ciseli-custom | SNP | tv | func_cds | het | 92.8964 | 99.2473 | 87.3095 | 32.0576 | 2637 | 20 | 2635 | 383 | 2 | 0.5222 | |
| ciseli-custom | SNP | tv | func_cds | hetalt | 94.7368 | 90.0000 | 100.0000 | 35.7143 | 9 | 1 | 9 | 0 | 0 | ||
| ciseli-custom | SNP | tv | func_cds | homalt | 99.1797 | 99.8826 | 98.4866 | 26.8313 | 1702 | 2 | 1692 | 26 | 9 | 34.6154 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 70.5551 | 95.3826 | 55.9831 | 73.4742 | 1446 | 70 | 1455 | 1144 | 27 | 2.3601 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 63.5187 | 93.8508 | 48.0041 | 71.9172 | 931 | 61 | 938 | 1016 | 8 | 0.7874 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.4490 | 98.2824 | 80.4044 | 77.2309 | 515 | 9 | 517 | 126 | 19 | 15.0794 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 89.4833 | 97.3914 | 82.7630 | 66.8151 | 26956 | 722 | 27013 | 5626 | 378 | 6.7188 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 86.4138 | 96.3627 | 78.3270 | 66.2442 | 16929 | 639 | 17004 | 4705 | 98 | 2.0829 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 55.5556 | 76.9231 | 43.4783 | 70.8861 | 10 | 3 | 10 | 13 | 3 | 23.0769 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.2928 | 99.2077 | 91.6751 | 67.8866 | 10017 | 80 | 9999 | 908 | 277 | 30.5066 | |