PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
11151-11200 / 86044 show all
cchapple-customSNP*map_l250_m2_e0*
96.1788
95.9417
96.4172
90.1898
7565320756228165
23.1317
cchapple-customSNP*map_l250_m2_e0het
95.2059
95.7451
94.6728
91.6166
4973221497628064
22.8571
cchapple-customSNP*map_l250_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
50000
cchapple-customSNP*map_l250_m2_e0homalt
98.1039
96.3142
99.9613
85.0046
258799258611
100.0000
cchapple-customSNP*map_l250_m2_e1*
96.1831
95.9309
96.4367
90.2654
7662325765928366
23.3216
cchapple-customSNP*map_l250_m2_e1het
95.2117
95.7257
94.7032
91.6862
5039225504228265
23.0496
cchapple-customSNP*map_l250_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
50000
cchapple-customSNP*map_l250_m2_e1homalt
98.1075
96.3208
99.9618
85.0801
2618100261711
100.0000
cchapple-customSNP*map_siren*
98.2653
98.4743
98.0572
58.9696
14399722311439992853550
19.2780
cchapple-customSNP*map_sirenhet
97.7546
98.5944
96.9290
63.2688
897121279898262846543
19.0794
cchapple-customSNP*map_sirenhetalt
0.0000
98.7654
0.0000
0.0000
801000
cchapple-customSNP*map_sirenhomalt
99.1241
98.2758
99.9871
48.6990
542059515417377
100.0000
cchapple-customSNP*segdup*
99.5856
99.8219
99.3504
91.8828
28017502798818325
13.6612
cchapple-customSNP*segduphet
99.4246
99.7863
99.0654
93.2744
1728037172781635
3.0675
cchapple-customSNP*segduphetalt
0.0000
100.0000
0.0000
0.0000
70000
cchapple-customSNP*segduphomalt
99.8463
99.8790
99.8136
87.7694
1073013107102020
100.0000
cchapple-customSNP*segdupwithalt*
0.0000
100.0000
00000
cchapple-customSNP*segdupwithalthet
0.0000
100.0000
00000
cchapple-customSNP*segdupwithalthetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNP*segdupwithalthomalt
0.0000
100.0000
00000
cchapple-customSNP*tech_badpromoters*
98.0932
98.7261
97.4684
50.9317
155215441
25.0000
cchapple-customSNP*tech_badpromotershet
97.4359
98.7013
96.2025
56.1111
7617630
0.0000
cchapple-customSNP*tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNP*tech_badpromotershomalt
98.7421
98.7500
98.7342
44.3662
7917811
100.0000
cchapple-customSNPti**
99.8773
99.8866
99.8679
19.3368
2083147236420819362754477
17.3203
cchapple-customSNPti*het
99.8339
99.8795
99.7883
21.7295
1280346154512803842716443
16.3108
cchapple-customSNPti*hetalt
0.0000
99.4845
0.0000
0.0000
5793000
cchapple-customSNPti*homalt
99.9468
99.8984
99.9953
15.1867
8022228168015523834
89.4737
cchapple-customSNPtiHG002complexvar*
99.8096
99.6932
99.9263
17.3694
5068761560505502373274
73.4584
cchapple-customSNPtiHG002complexvarhet
99.7945
99.6988
99.8903
17.3501
313818948313318344249
72.3837
cchapple-customSNPtiHG002complexvarhetalt
0.0000
98.5507
0.0000
0.0000
2043000
cchapple-customSNPtiHG002complexvarhomalt
99.8348
99.6852
99.9849
17.4009
1928546091921842925
86.2069
cchapple-customSNPtiHG002compoundhet*
99.2669
98.9816
99.5539
35.4095
17300178174067864
82.0513
cchapple-customSNPtiHG002compoundhethet
99.0513
98.8217
99.2820
39.9079
9393112102337460
81.0811
cchapple-customSNPtiHG002compoundhethetalt
0.0000
99.4819
0.0000
0.0000
5763000
cchapple-customSNPtiHG002compoundhethomalt
99.5445
99.1480
99.9443
27.6293
733163717344
100.0000
cchapple-customSNPtidecoy*
0.0000
100.0000
00000
cchapple-customSNPtidecoyhet
0.0000
100.0000
00000
cchapple-customSNPtidecoyhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtidecoyhomalt
0.0000
100.0000
00000
cchapple-customSNPtifunc_cds*
99.8586
99.9202
99.7971
24.6780
137761113774281
3.5714
cchapple-customSNPtifunc_cdshet
99.7946
99.9177
99.6718
27.6397
849778504281
3.5714
cchapple-customSNPtifunc_cdshetalt
0.0000
100.0000
0.0000
0.0000
80000
cchapple-customSNPtifunc_cdshomalt
99.9621
99.9242
100.0000
19.3326
52714527000
cchapple-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.3846
99.2919
99.4776
66.9410
3225233237173
17.6471
cchapple-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
99.2140
99.2589
99.1691
72.0797
2009152029173
17.6471
cchapple-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6721
99.3464
100.0000
51.9682
12168120800
cchapple-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000