PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
11001-11050 / 86044 show all
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.6256
98.1818
99.0734
84.3863
12422312831210
83.3333
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.3403
97.9849
98.6982
87.4181
77816834119
81.8182
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.1386
98.5075
99.7778
71.4829
462744911
100.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.9299
98.8905
98.9693
81.5684
41004641294311
25.5814
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.5425
98.6389
98.4462
84.2913
26093626614210
23.8095
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6313
99.3324
99.9319
72.9366
148810146811
100.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.3555
99.2863
97.4421
79.1072
144671041447638019
5.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.5481
99.1241
96.0215
82.4215
905380912337817
4.4974
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
100.0000
0.0000
0.0000
150000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7596
99.5574
99.9627
68.6053
539924535322
100.0000
cchapple-customSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.4664
99.3822
99.5507
61.1367
48263048742210
45.4545
cchapple-customSNPtvlowcmp_SimpleRepeat_diTR_11to50het
99.3270
99.3199
99.3340
66.8350
3067213132219
42.8571
cchapple-customSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.7161
99.4907
99.9426
43.6105
17589174211
100.0000
cchapple-customSNPtvlowcmp_SimpleRepeat_diTR_51to200*
79.1667
73.0769
86.3636
95.4825
1971930
0.0000
cchapple-customSNPtvlowcmp_SimpleRepeat_diTR_51to200het
72.4706
64.7059
82.3529
96.0465
1161430
0.0000
cchapple-customSNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
94.1176
88.8889
100.0000
91.2281
81500
cchapple-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8854
99.8625
99.9082
58.4392
108961510886106
60.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6597
99.8868
99.4337
56.4666
617776145352
5.7143
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5174
99.9237
99.1144
60.1090
392833917352
5.7143
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9111
99.8224
100.0000
48.0532
22484222800
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6375
99.8969
99.3795
60.3689
387443844242
8.3333
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4783
99.9198
99.0408
63.4745
249222478242
8.3333
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9276
99.8554
100.0000
53.0584
13812136600
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.7350
92.2280
97.3822
89.6054
35630372101
10.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
93.6110
90.9420
96.4413
90.6799
25125271101
10.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
97.6744
95.4545
100.0000
84.6970
105510100
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.6230
96.5771
98.6919
84.5324
26249327163623
63.8889
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.0578
96.0317
98.1061
87.2243
16947018133522
62.8571
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.7220
97.5815
99.8894
72.8284
9282390311
100.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.0168
97.1706
98.8778
83.5902
23016723792722
81.4815
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.5586
96.7635
98.3668
86.6207
14654915662621
80.7692
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8722
97.8873
99.8771
70.5393
8341881311
100.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.1305
99.0001
99.2612
79.9407
10693108107488026
32.5000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.8536
98.8377
98.8695
82.8620
68038069097925
31.6456
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6282
99.2848
99.9740
70.9201
388728383911
100.0000