PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10951-11000 / 86044 show all
cchapple-customSNPtvdecoyhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvdecoyhomalt
0.0000
100.0000
00000
cchapple-customSNPtvfunc_cds*
99.5556
99.9085
99.2053
32.6708
436744369350
0.0000
cchapple-customSNPtvfunc_cdshet
99.2733
99.8495
98.7037
37.1216
265342665350
0.0000
cchapple-customSNPtvfunc_cdshetalt
0.0000
100.0000
0.0000
0.0000
100000
cchapple-customSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
24.1656
17040170400
cchapple-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
98.6758
98.2850
99.0698
67.8831
1490261491141
7.1429
cchapple-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.1287
97.5806
98.6829
71.9841
96824974130
0.0000
cchapple-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.7125
99.6183
99.8069
55.4600
522251711
100.0000
cchapple-customSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
cchapple-customSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
cchapple-customSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
cchapple-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3227
99.7146
98.9339
60.9851
27599792765529824
8.0537
cchapple-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0130
99.6869
98.3480
64.2091
17513551762229623
7.7703
cchapple-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
92.3077
0.0000
0.0000
121000
cchapple-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8760
99.7722
99.9801
53.5072
10074231003321
50.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.3555
99.2863
97.4421
79.1072
144671041447638019
5.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.5481
99.1241
96.0215
82.4215
905380912337817
4.4974
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
100.0000
0.0000
0.0000
150000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7596
99.5574
99.9627
68.6053
539924535322
100.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.7005
99.7006
99.7004
54.6843
13324133140
0.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.5322
99.5322
99.5322
58.8745
851485140
0.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
44.6367
481048000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4934
99.9080
99.0821
64.7126
217222159201
5.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.2795
100.0000
98.5694
67.5186
138701378201
5.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8726
99.7455
100.0000
58.2576
784278100
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.3038
99.8611
98.7526
69.4861
143821425181
5.5556
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.0153
100.0000
98.0498
71.9708
9140905181
5.5556
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8092
99.6190
100.0000
63.7883
523252000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
91.6233
89.0909
94.3038
89.1185
1471814990
0.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
89.3162
86.2903
92.5620
89.7544
1071711290
0.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.7654
97.5610
100.0000
86.3469
4013700
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.9319
97.2574
98.6159
84.9620
13833914252010
50.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.3086
96.6046
98.0229
87.6589
88231942199
47.3684
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.1030
98.4221
99.7934
73.4358
499848311
100.0000