PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10901-10950 / 86044 show all
cchapple-customSNPtimap_l150_m2_e1*
96.8601
96.7186
97.0020
78.5397
2004368020028619164
26.4943
cchapple-customSNPtimap_l150_m2_e1het
96.0905
96.8652
95.3281
81.7323
1260740812610618163
26.3754
cchapple-customSNPtimap_l150_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
150000
cchapple-customSNPtimap_l150_m2_e1homalt
98.1938
96.4643
99.9865
68.8251
7421272741811
100.0000
cchapple-customSNPtimap_l250_m0_e0*
95.9625
94.5985
97.3664
93.5930
12967412943513
37.1429
cchapple-customSNPtimap_l250_m0_e0het
95.0637
93.8972
96.2596
94.5783
877578753412
35.2941
cchapple-customSNPtimap_l250_m0_e0hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtimap_l250_m0_e0homalt
97.8972
96.1009
99.7619
89.4393
4191741911
100.0000
cchapple-customSNPtimap_l250_m1_e0*
96.3982
95.8943
96.9074
89.5799
4391188438714038
27.1429
cchapple-customSNPtimap_l250_m1_e0het
95.4232
95.5189
95.3277
91.2575
2835133283613937
26.6187
cchapple-customSNPtimap_l250_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
40000
cchapple-customSNPtimap_l250_m1_e0homalt
98.2278
96.5775
99.9356
83.5174
155255155111
100.0000
cchapple-customSNPtimap_l250_m2_e0*
96.4779
96.0264
96.9336
90.1381
4809199480515241
26.9737
cchapple-customSNPtimap_l250_m2_e0het
95.5856
95.7898
95.3823
91.6456
3117137311915140
26.4901
cchapple-customSNPtimap_l250_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
50000
cchapple-customSNPtimap_l250_m2_e0homalt
98.1670
96.4551
99.9407
84.8332
168762168611
100.0000
cchapple-customSNPtimap_l250_m2_e1*
96.4747
96.0008
96.9534
90.2115
4873203486915342
27.4510
cchapple-customSNPtimap_l250_m2_e1het
95.5838
95.7563
95.4120
91.7154
3159140316115241
26.9737
cchapple-customSNPtimap_l250_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
50000
cchapple-customSNPtimap_l250_m2_e1homalt
98.1620
96.4447
99.9415
84.8962
170963170811
100.0000
cchapple-customSNPtimap_siren*
98.4477
98.4784
98.4171
57.2072
988281527987961589367
23.0963
cchapple-customSNPtimap_sirenhet
98.0329
98.5813
97.4906
61.4640
61497885615381584362
22.8535
cchapple-customSNPtimap_sirenhetalt
0.0000
98.2456
0.0000
0.0000
561000
cchapple-customSNPtimap_sirenhomalt
99.1409
98.3094
99.9866
47.3567
372756413725855
100.0000
cchapple-customSNPtisegdup*
99.6040
99.8311
99.3779
91.2552
19504331949012216
13.1148
cchapple-customSNPtisegduphet
99.4449
99.8088
99.0837
92.7182
1200723120031115
4.5045
cchapple-customSNPtisegduphetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customSNPtisegduphomalt
99.8600
99.8668
99.8533
87.0523
74951074871111
100.0000
cchapple-customSNPtisegdupwithalt*
0.0000
100.0000
00000
cchapple-customSNPtisegdupwithalthet
0.0000
100.0000
00000
cchapple-customSNPtisegdupwithalthetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtisegdupwithalthomalt
0.0000
100.0000
00000
cchapple-customSNPtitech_badpromoters*
99.4152
100.0000
98.8372
43.4211
8508510
0.0000
cchapple-customSNPtitech_badpromotershet
98.8764
100.0000
97.7778
47.0588
4404410
0.0000
cchapple-customSNPtitech_badpromotershetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtitech_badpromotershomalt
100.0000
100.0000
100.0000
38.8060
4104100
cchapple-customSNPtv**
99.7746
99.8756
99.6738
23.8746
96848412069676373167250
7.8939
cchapple-customSNPtv*het
99.6701
99.8702
99.4708
26.9512
5909287685915533147233
7.4039
cchapple-customSNPtv*hetalt
0.0000
99.6556
0.0000
0.0000
8683000
cchapple-customSNPtv*homalt
99.9396
99.8847
99.9947
18.4432
3766884353760842017
85.0000
cchapple-customSNPtvHG002complexvar*
99.7805
99.6506
99.9108
21.2813
245292860244113218153
70.1835
cchapple-customSNPtvHG002complexvarhet
99.7615
99.6630
99.8602
21.5432
150223508149954210146
69.5238
cchapple-customSNPtvHG002complexvarhetalt
0.0000
99.0323
0.0000
0.0000
3073000
cchapple-customSNPtvHG002complexvarhomalt
99.8120
99.6331
99.9915
20.8601
947623499415987
87.5000
cchapple-customSNPtvHG002compoundhet*
99.1131
98.7784
99.4501
47.4326
881410992245134
66.6667
cchapple-customSNPtvHG002compoundhethet
98.8352
98.5020
99.1705
51.5239
46037059785033
66.0000
cchapple-customSNPtvHG002compoundhethetalt
0.0000
99.6520
0.0000
0.0000
8593000
cchapple-customSNPtvHG002compoundhethomalt
99.4506
98.9374
99.9692
37.6656
335236324611
100.0000
cchapple-customSNPtvdecoy*
0.0000
100.0000
00000
cchapple-customSNPtvdecoyhet
0.0000
100.0000
00000