PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10751-10800 / 86044 show all
cchapple-customSNPtvmap_l125_m2_e1*
96.6306
97.3885
95.8843
75.9688
1622243516215696117
16.8103
cchapple-customSNPtvmap_l125_m2_e1het
95.6281
97.6500
93.6882
79.3490
1030524810331696117
16.8103
cchapple-customSNPtvmap_l125_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
300000
cchapple-customSNPtvmap_l125_m2_e1homalt
98.4366
96.9213
100.0000
65.3352
5887187588400
cchapple-customSNPtvmap_l150_m0_e0*
95.4922
95.9751
95.0142
82.7299
4006168400221043
20.4762
cchapple-customSNPtvmap_l150_m0_e0het
94.6151
96.4122
92.8838
85.0097
2741102274121043
20.4762
cchapple-customSNPtvmap_l150_m0_e0hetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customSNPtvmap_l150_m0_e0homalt
97.4517
95.0301
100.0000
73.1873
126266126100
cchapple-customSNPtvmap_l150_m1_e0*
96.2415
96.9483
95.5449
77.7956
105793331057349381
16.4300
cchapple-customSNPtvmap_l150_m1_e0het
95.1002
97.0775
93.2019
81.0524
6743203675949381
16.4300
cchapple-customSNPtvmap_l150_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
200000
cchapple-customSNPtvmap_l150_m1_e0homalt
98.3252
96.7055
100.0000
67.0155
3816130381400
cchapple-customSNPtvmap_l150_m2_e0*
96.3013
97.0233
95.5899
79.4079
110173381101150883
16.3386
cchapple-customSNPtvmap_l150_m2_e0het
95.1992
97.1870
93.2911
82.3459
7048204706450883
16.3386
cchapple-customSNPtvmap_l150_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
200000
cchapple-customSNPtvmap_l150_m2_e0homalt
98.3317
96.7181
100.0000
69.7502
3949134394700
cchapple-customSNPtvmap_l150_m2_e1*
96.3274
97.0614
95.6045
79.4325
111643381115851383
16.1793
cchapple-customSNPtvmap_l150_m2_e1het
95.2289
97.2237
93.3142
82.3755
7144204716051383
16.1793
cchapple-customSNPtvmap_l150_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
200000
cchapple-customSNPtvmap_l150_m2_e1homalt
98.3526
96.7586
100.0000
69.7328
4000134399800
cchapple-customSNPtvmap_l250_m0_e0*
94.5681
94.5098
94.6265
93.8008
72342722418
19.5122
cchapple-customSNPtvmap_l250_m0_e0het
93.7547
94.5804
92.9432
94.2561
54131540418
19.5122
cchapple-customSNPtvmap_l250_m0_e0hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvmap_l250_m0_e0homalt
97.0667
94.3005
100.0000
91.7009
1821118200
cchapple-customSNPtvmap_l250_m1_e0*
95.5601
95.6177
95.5026
89.6633
2531116252711924
20.1681
cchapple-customSNPtvmap_l250_m1_e0het
94.4921
95.5232
93.4830
91.0657
170780170711924
20.1681
cchapple-customSNPtvmap_l250_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
40000
cchapple-customSNPtvmap_l250_m1_e0homalt
97.8520
95.7944
100.0000
84.1085
8203682000
cchapple-customSNPtvmap_l250_m2_e0*
95.6656
95.8015
95.5301
90.2861
2761121275712924
18.6047
cchapple-customSNPtvmap_l250_m2_e0het
94.5749
95.6701
93.5045
91.5751
185684185712924
18.6047
cchapple-customSNPtvmap_l250_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
50000
cchapple-customSNPtvmap_l250_m2_e0homalt
97.9858
96.0512
100.0000
85.3349
9003790000
cchapple-customSNPtvmap_l250_m2_e1*
95.6819
95.8162
95.5479
90.3656
2794122279013024
18.4615
cchapple-customSNPtvmap_l250_m2_e1het
94.5928
95.6743
93.5356
91.6445
188085188113024
18.4615
cchapple-customSNPtvmap_l250_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
50000
cchapple-customSNPtvmap_l250_m2_e1homalt
98.0054
96.0888
100.0000
85.4327
9093790900
cchapple-customSNPtvmap_siren*
97.8668
98.4651
97.2758
62.3550
45225705452061266183
14.4550
cchapple-customSNPtvmap_sirenhet
97.1514
98.6228
95.7232
66.6384
28215394282911264181
14.3196
cchapple-customSNPtvmap_sirenhetalt
0.0000
98.7654
0.0000
0.0000
801000
cchapple-customSNPtvmap_sirenhomalt
99.0870
98.2019
99.9882
51.4688
169303101691522
100.0000
cchapple-customSNPtvsegdup*
99.5434
99.8008
99.2874
93.0362
8515178499619
14.7541
cchapple-customSNPtvsegduphet
99.3783
99.7352
99.0240
94.2756
5273145276520
0.0000
cchapple-customSNPtvsegduphetalt
0.0000
100.0000
0.0000
0.0000
70000
cchapple-customSNPtvsegduphomalt
99.8144
99.9074
99.7215
89.1707
32353322399
100.0000
cchapple-customSNPtvsegdupwithalt*
0.0000
100.0000
00000
cchapple-customSNPtvsegdupwithalthet
0.0000
100.0000
00000
cchapple-customSNPtvsegdupwithalthetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvsegdupwithalthomalt
0.0000
100.0000
00000
cchapple-customSNPtvtech_badpromoters*
96.5228
97.2222
95.8333
57.6471
7026931
33.3333
cchapple-customSNPtvtech_badpromotershet
95.5224
96.9697
94.1176
64.2105
3213220
0.0000