PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10701-10750 / 86044 show all
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
100.0000
0.0000
0.0000
50000
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9456
99.8912
100.0000
31.5724
27553274600
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
83.1169
76.1905
91.4286
87.5887
32103231
33.3333
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200het
83.1683
75.0000
93.3333
87.0690
2792820
0.0000
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
81.6327
83.3333
80.0000
90.0000
51411
100.0000
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.5073
99.5362
99.4784
36.9220
3434163433185
27.7778
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.3944
99.6258
99.1640
40.2940
213082135185
27.7778
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
0.0000
0.0000
01000
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.7323
99.4661
100.0000
30.4021
13047129800
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
10000
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
10000
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_gt200het
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvmap_l100_m0_e0*
96.3944
97.1220
95.6777
73.2738
107653191075848683
17.0782
cchapple-customSNPtvmap_l100_m0_e0het
95.4613
97.4522
93.5501
77.1681
7038184704948683
17.0782
cchapple-customSNPtvmap_l100_m0_e0hetalt
0.0000
100.0000
0.0000
0.0000
160000
cchapple-customSNPtvmap_l100_m0_e0homalt
98.2136
96.4899
100.0000
59.1024
3711135370900
cchapple-customSNPtvmap_l100_m1_e0*
97.1628
97.8613
96.4743
69.7586
2397752423970876133
15.1826
cchapple-customSNPtvmap_l100_m1_e0het
96.2530
98.0346
94.5349
73.9009
1511430315153876133
15.1826
cchapple-customSNPtvmap_l100_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
410000
cchapple-customSNPtvmap_l100_m1_e0homalt
98.7629
97.5561
100.0000
57.4941
8822221881700
cchapple-customSNPtvmap_l100_m2_e0*
97.1975
97.9028
96.5023
71.7198
2450852524500888133
14.9775
cchapple-customSNPtvmap_l100_m2_e0het
96.2979
98.0731
94.5857
75.5847
1547330415513888133
14.9775
cchapple-customSNPtvmap_l100_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
420000
cchapple-customSNPtvmap_l100_m2_e0homalt
98.7862
97.6015
100.0000
60.2310
8993221898700
cchapple-customSNPtvmap_l100_m2_e1*
97.2075
97.9156
96.5096
71.7543
2475652724747895134
14.9721
cchapple-customSNPtvmap_l100_m2_e1het
96.3138
98.0926
94.5983
75.6213
1563430415674895134
14.9721
cchapple-customSNPtvmap_l100_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
430000
cchapple-customSNPtvmap_l100_m2_e1homalt
98.7868
97.6027
100.0000
60.2358
9079223907300
cchapple-customSNPtvmap_l125_m0_e0*
95.8633
96.5164
95.2189
78.5014
6400231639332156
17.4455
cchapple-customSNPtvmap_l125_m0_e0het
94.8705
96.8189
92.9989
81.5819
4261140426432156
17.4455
cchapple-customSNPtvmap_l125_m0_e0hetalt
0.0000
100.0000
0.0000
0.0000
90000
cchapple-customSNPtvmap_l125_m0_e0homalt
97.9085
95.9027
100.0000
66.3984
213091212900
cchapple-customSNPtvmap_l125_m1_e0*
96.5512
97.3027
95.8113
74.0329
1558443215577681116
17.0338
cchapple-customSNPtvmap_l125_m1_e0het
95.5171
97.5509
93.5664
77.7177
98782489904681116
17.0338
cchapple-customSNPtvmap_l125_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
300000
cchapple-customSNPtvmap_l125_m1_e0homalt
98.4050
96.8601
100.0000
62.4454
5676184567300
cchapple-customSNPtvmap_l125_m2_e0*
96.6110
97.3619
95.8717
75.9113
1605443516047691117
16.9320
cchapple-customSNPtvmap_l125_m2_e0het
95.6050
97.6250
93.6669
79.2937
1019424810220691117
16.9320
cchapple-customSNPtvmap_l125_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
300000
cchapple-customSNPtvmap_l125_m2_e0homalt
98.4215
96.8921
100.0000
65.2969
5830187582700