PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10651-10700 / 86044 show all
cchapple-customINDELC1_5decoy*
0.0000
100.0000
00000
cchapple-customINDELC1_5decoyhet
0.0000
100.0000
00000
cchapple-customINDELC1_5decoyhetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELC1_5decoyhomalt
0.0000
100.0000
00000
cchapple-customINDELC1_5func_cds*
0.0000
0.0000
100.0000
95.4545
00100
cchapple-customINDELC1_5func_cdshet
0.0000
100.0000
00000
cchapple-customINDELC1_5func_cdshetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELC1_5func_cdshomalt
0.0000
0.0000
100.0000
90.0000
00100
cchapple-customINDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
64.8649
93.6097
0024133
23.0769
cchapple-customINDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
61.2903
93.6214
0019122
16.6667
cchapple-customINDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
83.3333
93.5484
00511
100.0000
cchapple-customINDELC1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
cchapple-customINDELC1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
cchapple-customINDELC1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELC1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
cchapple-customINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
77.4037
66.6667
92.2631
96.6489
21477405
12.5000
cchapple-customINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
76.4641
66.6667
89.6373
96.7233
21346405
12.5000
cchapple-customINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
96.4090
0013100
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
0.0000
0.0000
84.9624
96.2875
01226403
7.5000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
0.0000
0.0000
82.0276
96.1532
01178392
5.1282
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
0.0000
0.0000
97.9592
96.7848
004811
100.0000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
0.0000
0.0000
93.3333
92.7885
001410
0.0000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
0.0000
0.0000
90.0000
93.9024
00910
0.0000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
88.6364
00500
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
0.0000
0.0000
96.7742
96.0154
003010
0.0000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
0.0000
0.0000
95.2381
96.4103
002010
0.0000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
94.8187
001000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
0.0000
0.0000
95.4545
96.6565
002110
0.0000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
0.0000
0.0000
93.7500
96.7480
001510
0.0000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
96.3855
00600
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
0.0000
0.0000
56.2500
94.0520
00972
28.5714
cchapple-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.8504
99.8290
99.8718
59.4899
700712701196
66.6667
cchapple-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
100.0000
0.0000
0.0000
50000
cchapple-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9485
99.9228
99.9742
56.3906
38843387510
0.0000
cchapple-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
cchapple-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
cchapple-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
98.3439
99.7585
96.9689
38.4203
74341874542333
1.2876
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
97.4327
99.6801
95.2844
41.6647
46741547082333
1.2876