PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10301-10350 / 86044 show all
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
96.1373
0.0000
0.0000
2249000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.3884
99.2047
99.5729
68.2811
187115186587
87.5000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4660
99.3376
99.5947
73.4410
35992436861512
80.0000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5093
99.4855
99.5331
74.9202
2127112345119
81.8182
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
95.4545
0.0000
0.0000
1266000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.5925
99.4826
99.7026
70.3810
13467134143
75.0000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.8801
90.1364
95.7959
52.1555
54836007793342302
88.3041
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
93.6937
90.7254
96.8627
52.3369
19762026638215185
86.0465
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
86.2651
0.0000
0.0000
2349374000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
93.8667
97.9695
90.0936
51.1619
1158241155127117
92.1260
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.4790
30300
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.0000
20200
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
94.7368
10100
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1590
96.0055
98.3406
45.9292
36388151449009827740
89.4800
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.2868
95.8815
98.7340
45.9174
1401560239539507431
85.0099
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
93.6792
0.0000
0.0000
12894870000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.1247
99.5589
96.7314
45.9773
9479429470320309
96.5625
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.9358
97.0774
98.8095
45.2536
3105793541417499447
89.5792
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.9013
96.7415
99.0893
45.1717
1211340833076304254
83.5526
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
95.4255
0.0000
0.0000
10597508000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.7335
99.7729
97.7156
45.5716
8347198341195193
98.9744
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3184
96.2571
98.4034
52.4797
41713162254546885782
88.3616
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.4986
96.2849
98.7434
52.0928
1715766243140549461
83.9709
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
93.6075
0.0000
0.0000
13135897000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.2813
99.4514
97.1385
53.8661
114216311406336321
95.5357
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.6609
96.7085
98.6322
60.0245
632002151784541088926
85.1103
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.7409
96.6568
98.8496
59.7558
29461101960407703560
79.6586
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
93.7863
0.0000
0.0000
156671038000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6906
99.4825
97.9112
60.8903
180729418047385366
95.0649
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.1110
97.3601
98.8735
45.3846
3562696645291516450
87.2093
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_11to50het
98.1220
97.1827
99.0797
47.1607
1531644434988325263
80.9231
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
95.4081
0.0000
0.0000
9994481000
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
98.8869
99.6041
98.1799
38.4191
103164110303191187
97.9058
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_51to200*
84.8454
79.2480
91.2936
44.8269
16654362590247237
95.9514
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_51to200het
85.6343
78.9796
93.5135
45.7111
3871032249156148
94.8718
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
74.7604
0.0000
0.0000
936316000
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
86.3345
95.2646
78.9352
39.3258
342173419189
97.8022
cchapple-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.6632
99.5223
99.8044
57.7539
28125135285785639
69.6429
cchapple-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.6346
99.4826
99.7870
59.5165
1634485173303722
59.4595
cchapple-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
95.3271
0.0000
0.0000
51025000
cchapple-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8050
99.7787
99.8314
54.7146
1127125112481917
89.4737
cchapple-customINDEL*lowcmp_SimpleRepeat_homopolymer_gt10*
83.2304
79.8387
86.9231
99.9093
9925113175
29.4118
cchapple-customINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
81.0136
77.0115
85.4545
99.8819
672094164
25.0000
cchapple-customINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
87.5000
0.0000
0.0000
142000
cchapple-customINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
90.1186
85.7143
95.0000
99.9602
1831911
100.0000
cchapple-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
98.9964
98.5399
99.4571
53.2701
1957229021802119100
84.0336
cchapple-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
98.9656
98.4786
99.4574
53.6403
10939169157638667
77.9070
cchapple-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
96.5697
0.0000
0.0000
259092000
cchapple-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4894
99.5224
99.4565
52.2754
60432960393333
100.0000