PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9301-9350 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | het | 98.0718 | 98.6342 | 97.5158 | 86.6842 | 2311 | 32 | 2316 | 59 | 11 | 18.6441 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | hetalt | 94.8678 | 90.9091 | 99.1870 | 86.1953 | 120 | 12 | 122 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | homalt | 99.1826 | 99.4536 | 98.9130 | 84.6885 | 1274 | 7 | 1274 | 14 | 6 | 42.8571 | |
| bgallagher-sentieon | INDEL | * | map_l125_m0_e0 | * | 97.5866 | 98.4127 | 96.7742 | 90.0652 | 868 | 14 | 870 | 29 | 6 | 20.6897 | |
| bgallagher-sentieon | INDEL | * | map_l125_m0_e0 | het | 97.0529 | 97.9557 | 96.1667 | 90.6074 | 575 | 12 | 577 | 23 | 2 | 8.6957 | |
| bgallagher-sentieon | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.9541 | 11 | 0 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l125_m0_e0 | homalt | 98.6014 | 99.2958 | 97.9167 | 88.2112 | 282 | 2 | 282 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | INDEL | * | map_l125_m1_e0 | * | 98.3703 | 98.7186 | 98.0245 | 87.6918 | 2080 | 27 | 2084 | 42 | 9 | 21.4286 | |
| bgallagher-sentieon | INDEL | * | map_l125_m1_e0 | het | 97.9174 | 98.4270 | 97.4132 | 88.3493 | 1314 | 21 | 1318 | 35 | 5 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 91.8455 | 38 | 2 | 38 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l125_m1_e0 | homalt | 99.2502 | 99.4536 | 99.0476 | 85.8491 | 728 | 4 | 728 | 7 | 4 | 57.1429 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | * | 98.3684 | 98.7250 | 98.0144 | 88.4715 | 2168 | 28 | 2172 | 44 | 9 | 20.4545 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | het | 97.9642 | 98.4184 | 97.5142 | 89.0844 | 1369 | 22 | 1373 | 35 | 5 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 92.5512 | 40 | 2 | 40 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | homalt | 99.1509 | 99.4758 | 98.8281 | 86.7266 | 759 | 4 | 759 | 9 | 4 | 44.4444 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e1 | * | 98.3668 | 98.6966 | 98.0392 | 88.5574 | 2196 | 29 | 2200 | 44 | 9 | 20.4545 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e1 | het | 97.9886 | 98.4375 | 97.5439 | 89.1635 | 1386 | 22 | 1390 | 35 | 5 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 92.6874 | 40 | 3 | 40 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l125_m2_e1 | homalt | 99.1629 | 99.4832 | 98.8447 | 86.8279 | 770 | 4 | 770 | 9 | 4 | 44.4444 | |
| bgallagher-sentieon | INDEL | * | map_l150_m0_e0 | * | 97.3095 | 98.2490 | 96.3878 | 92.6248 | 505 | 9 | 507 | 19 | 4 | 21.0526 | |
| bgallagher-sentieon | INDEL | * | map_l150_m0_e0 | het | 96.6744 | 97.6540 | 95.7143 | 93.1170 | 333 | 8 | 335 | 15 | 1 | 6.6667 | |
| bgallagher-sentieon | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4785 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m0_e0 | homalt | 98.4894 | 99.3902 | 97.6048 | 91.1359 | 163 | 1 | 163 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | * | 97.9979 | 98.5800 | 97.4227 | 90.0883 | 1319 | 19 | 1323 | 35 | 7 | 20.0000 | |
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | het | 97.5150 | 98.3626 | 96.6819 | 90.6743 | 841 | 14 | 845 | 29 | 4 | 13.7931 | |
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.2693 | 20 | 1 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | homalt | 98.9201 | 99.1342 | 98.7069 | 88.3417 | 458 | 4 | 458 | 6 | 3 | 50.0000 | |
| bgallagher-sentieon | INDEL | * | map_l150_m2_e0 | * | 98.0622 | 98.6506 | 97.4808 | 90.7478 | 1389 | 19 | 1393 | 36 | 7 | 19.4444 | |
| bgallagher-sentieon | INDEL | * | map_l150_m2_e0 | het | 97.6001 | 98.4547 | 96.7603 | 91.1986 | 892 | 14 | 896 | 30 | 4 | 13.3333 | |
| bgallagher-sentieon | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.9875 | 20 | 1 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m2_e0 | homalt | 98.9627 | 99.1684 | 98.7578 | 89.3260 | 477 | 4 | 477 | 6 | 3 | 50.0000 | |
| bgallagher-sentieon | INDEL | * | map_l150_m2_e1 | * | 97.9994 | 98.5407 | 97.4640 | 90.7582 | 1418 | 21 | 1422 | 37 | 8 | 21.6216 | |
| bgallagher-sentieon | INDEL | * | map_l150_m2_e1 | het | 97.5914 | 98.3766 | 96.8187 | 91.2287 | 909 | 15 | 913 | 30 | 4 | 13.3333 | |
| bgallagher-sentieon | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 94.8655 | 21 | 2 | 21 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m2_e1 | homalt | 98.8855 | 99.1870 | 98.5859 | 89.3019 | 488 | 4 | 488 | 7 | 4 | 57.1429 | |
| bgallagher-sentieon | INDEL | * | map_l250_m0_e0 | * | 90.2439 | 94.8718 | 86.0465 | 97.7598 | 74 | 4 | 74 | 12 | 2 | 16.6667 | |
| bgallagher-sentieon | INDEL | * | map_l250_m0_e0 | het | 88.4956 | 94.3396 | 83.3333 | 97.8198 | 50 | 3 | 50 | 10 | 1 | 10.0000 | |
| bgallagher-sentieon | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | * | map_l250_m0_e0 | homalt | 94.1176 | 96.0000 | 92.3077 | 97.4206 | 24 | 1 | 24 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | * | 95.9612 | 97.3770 | 94.5860 | 95.9242 | 297 | 8 | 297 | 17 | 4 | 23.5294 | |
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | het | 94.8454 | 96.8421 | 92.9293 | 96.3327 | 184 | 6 | 184 | 14 | 2 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7033 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | homalt | 97.7169 | 98.1651 | 97.2727 | 94.8187 | 107 | 2 | 107 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | * | 96.2742 | 97.5831 | 95.0000 | 96.1621 | 323 | 8 | 323 | 17 | 4 | 23.5294 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | het | 95.3271 | 97.1429 | 93.5780 | 96.4748 | 204 | 6 | 204 | 14 | 2 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3094 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | homalt | 97.8355 | 98.2609 | 97.4138 | 95.2692 | 113 | 2 | 113 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e1 | * | 96.2963 | 97.5976 | 95.0292 | 96.2426 | 325 | 8 | 325 | 17 | 4 | 23.5294 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e1 | het | 95.3488 | 97.1564 | 93.6073 | 96.5517 | 205 | 6 | 205 | 14 | 2 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 6 | 0 | 6 | 0 | 0 | ||