PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8751-8800 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7011 | 2 | 0 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m0_e0 | homalt | 99.4152 | 100.0000 | 98.8372 | 90.2935 | 85 | 0 | 85 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m1_e0 | * | 98.2056 | 99.0237 | 97.4008 | 89.1607 | 710 | 7 | 712 | 19 | 4 | 21.0526 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m1_e0 | het | 97.7580 | 99.1701 | 96.3855 | 89.4826 | 478 | 4 | 480 | 18 | 3 | 16.6667 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.0297 | 6 | 1 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.3407 | 99.1228 | 99.5595 | 87.4377 | 226 | 2 | 226 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e0 | * | 98.3127 | 99.0826 | 97.5547 | 89.6483 | 756 | 7 | 758 | 19 | 4 | 21.0526 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e0 | het | 97.8953 | 99.2218 | 96.6038 | 89.9048 | 510 | 4 | 512 | 18 | 3 | 16.6667 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.3799 | 6 | 1 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.3789 | 99.1736 | 99.5851 | 88.1105 | 240 | 2 | 240 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e1 | * | 98.2175 | 98.9717 | 97.4747 | 89.6498 | 770 | 8 | 772 | 20 | 5 | 25.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e1 | het | 97.8305 | 99.0421 | 96.6480 | 89.9495 | 517 | 5 | 519 | 18 | 3 | 16.6667 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.0213 | 7 | 1 | 7 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.1935 | 99.1935 | 99.1935 | 88.0424 | 246 | 2 | 246 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m0_e0 | * | 93.8776 | 100.0000 | 88.4615 | 97.3537 | 46 | 0 | 46 | 6 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m0_e0 | het | 91.6667 | 100.0000 | 84.6154 | 97.2898 | 33 | 0 | 33 | 6 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.3085 | 13 | 0 | 13 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | * | 97.4212 | 99.4152 | 95.5056 | 95.3670 | 170 | 1 | 170 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | het | 96.5217 | 100.0000 | 93.2773 | 95.6962 | 111 | 0 | 111 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 94.2387 | 56 | 1 | 56 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e0 | * | 97.6000 | 99.4565 | 95.8115 | 95.6223 | 183 | 1 | 183 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e0 | het | 96.8000 | 100.0000 | 93.7984 | 95.8694 | 121 | 0 | 121 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e0 | homalt | 99.1597 | 98.3333 | 100.0000 | 94.6895 | 59 | 1 | 59 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e1 | * | 97.6127 | 99.4595 | 95.8333 | 95.7037 | 184 | 1 | 184 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e1 | het | 96.8254 | 100.0000 | 93.8462 | 95.9286 | 122 | 0 | 122 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7444 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e1 | homalt | 99.1597 | 98.3333 | 100.0000 | 94.8381 | 59 | 1 | 59 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_siren | * | 99.2660 | 99.4899 | 99.0431 | 81.6382 | 3511 | 18 | 3519 | 34 | 6 | 17.6471 | |
| bgallagher-sentieon | INDEL | D1_5 | map_siren | het | 99.1706 | 99.6047 | 98.7402 | 81.3769 | 2268 | 9 | 2273 | 29 | 2 | 6.8966 | |
| bgallagher-sentieon | INDEL | D1_5 | map_siren | hetalt | 96.3415 | 94.0476 | 98.7500 | 89.6507 | 79 | 5 | 79 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_siren | homalt | 99.6580 | 99.6575 | 99.6584 | 81.1615 | 1164 | 4 | 1167 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | segdup | * | 99.5476 | 99.6374 | 99.4580 | 94.7935 | 1099 | 4 | 1101 | 6 | 2 | 33.3333 | |
| bgallagher-sentieon | INDEL | D1_5 | segdup | het | 99.4950 | 99.5665 | 99.4236 | 94.8997 | 689 | 3 | 690 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.2425 | 51 | 1 | 52 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.4986 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9942 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9912 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 48.5714 | 18 | 1 | 18 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | * | * | 98.0100 | 97.7771 | 98.2439 | 54.8211 | 25512 | 580 | 25511 | 456 | 416 | 91.2281 | |
| bgallagher-sentieon | INDEL | D6_15 | * | het | 98.7535 | 99.4306 | 98.0855 | 62.6961 | 11526 | 66 | 11476 | 224 | 188 | 83.9286 | |
| bgallagher-sentieon | INDEL | D6_15 | * | hetalt | 96.5632 | 93.7974 | 99.4971 | 32.7057 | 7667 | 507 | 7716 | 39 | 38 | 97.4359 | |
| bgallagher-sentieon | INDEL | D6_15 | * | homalt | 98.4421 | 99.8893 | 97.0362 | 55.3606 | 6319 | 7 | 6319 | 193 | 190 | 98.4456 | |