PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85251-85300 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D1_5 | segdup | het | 99.4935 | 99.2775 | 99.7106 | 94.2248 | 687 | 5 | 689 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.9645 | 50 | 2 | 50 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | segdup | homalt | 99.7207 | 99.4429 | 100.0000 | 94.4210 | 357 | 2 | 357 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9937 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9898 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 44.1176 | 19 | 0 | 19 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 8 | 0 | 8 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 9 | 0 | 9 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | * | * | 97.4536 | 96.9493 | 97.9633 | 52.8335 | 25296 | 796 | 25300 | 526 | 501 | 95.2471 | |
| rpoplin-dv42 | INDEL | D6_15 | * | het | 97.5270 | 99.0079 | 96.0896 | 61.5469 | 11477 | 115 | 11451 | 466 | 447 | 95.9227 | |
| rpoplin-dv42 | INDEL | D6_15 | * | hetalt | 95.9844 | 92.8187 | 99.3737 | 29.7010 | 7587 | 587 | 7616 | 48 | 47 | 97.9167 | |
| rpoplin-dv42 | INDEL | D6_15 | * | homalt | 99.1567 | 98.5141 | 99.8078 | 51.4461 | 6232 | 94 | 6233 | 12 | 7 | 58.3333 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002complexvar | * | 97.1394 | 96.3787 | 97.9123 | 57.5494 | 5110 | 192 | 5112 | 109 | 99 | 90.8257 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002complexvar | het | 97.7459 | 97.7564 | 97.7354 | 59.1947 | 3050 | 70 | 3021 | 70 | 62 | 88.5714 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002complexvar | hetalt | 92.5754 | 89.1412 | 96.2848 | 45.0369 | 903 | 110 | 933 | 36 | 35 | 97.2222 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002complexvar | homalt | 99.3561 | 98.9735 | 99.7416 | 60.7903 | 1157 | 12 | 1158 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002compoundhet | * | 94.2413 | 93.2455 | 95.2586 | 34.8015 | 8421 | 610 | 8418 | 419 | 413 | 98.5680 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002compoundhet | het | 80.3742 | 96.7290 | 68.7500 | 68.2119 | 828 | 28 | 825 | 375 | 371 | 98.9333 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002compoundhet | hetalt | 96.0843 | 92.8720 | 99.5267 | 21.0341 | 7570 | 581 | 7570 | 36 | 35 | 97.2222 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002compoundhet | homalt | 83.6364 | 95.8333 | 74.1935 | 78.9116 | 23 | 1 | 23 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9005 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.9474 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D6_15 | func_cds | * | 94.1176 | 93.0233 | 95.2381 | 54.8387 | 40 | 3 | 40 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | func_cds | het | 94.9153 | 96.5517 | 93.3333 | 53.1250 | 28 | 1 | 28 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | func_cds | homalt | 90.9091 | 83.3333 | 100.0000 | 60.0000 | 10 | 2 | 10 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.2087 | 89.1575 | 93.3565 | 53.3541 | 3503 | 426 | 3499 | 249 | 235 | 94.3775 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 86.4016 | 94.7971 | 79.3722 | 71.2035 | 911 | 50 | 885 | 230 | 217 | 94.3478 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.0666 | 85.7988 | 99.3224 | 30.2027 | 2030 | 336 | 2052 | 14 | 14 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.1506 | 93.3555 | 99.1182 | 52.8678 | 562 | 40 | 562 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 97.1698 | 4 | 2 | 4 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 75.0000 | 100.0000 | 60.0000 | 96.4789 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.6522 | 1 | 1 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.4805 | 97.1646 | 97.7985 | 57.9258 | 15592 | 455 | 15593 | 351 | 340 | 96.8661 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.8135 | 98.9459 | 94.7711 | 71.2462 | 5538 | 59 | 5528 | 305 | 297 | 97.3770 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1408 | 94.9941 | 99.3867 | 29.3238 | 6471 | 341 | 6482 | 40 | 39 | 97.5000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.1559 | 98.4882 | 99.8328 | 57.1769 | 3583 | 55 | 3583 | 6 | 4 | 66.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.3294 | 95.6482 | 97.0203 | 55.0608 | 16902 | 769 | 16899 | 519 | 497 | 95.7611 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.3424 | 98.3065 | 92.5518 | 69.4000 | 5747 | 99 | 5716 | 460 | 444 | 96.5217 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.9446 | 92.7410 | 99.3774 | 27.6985 | 7474 | 585 | 7502 | 47 | 46 | 97.8723 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6996 | 97.7430 | 99.6751 | 54.6036 | 3681 | 85 | 3681 | 12 | 7 | 58.3333 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5962 | 97.1292 | 98.0676 | 74.3176 | 203 | 6 | 203 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.0545 | 99.2126 | 96.9231 | 76.0589 | 126 | 1 | 126 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 56.6265 | 36 | 3 | 36 | 0 | 0 | ||