PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84901-84950 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 93.1818 | 93.1818 | 93.1818 | 91.0569 | 41 | 3 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.4220 | 99.6139 | 99.2308 | 80.6620 | 516 | 2 | 516 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | * | 98.5327 | 98.0994 | 98.9698 | 83.9986 | 1342 | 26 | 1345 | 14 | 7 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | het | 98.2852 | 97.4779 | 99.1060 | 84.2645 | 773 | 20 | 776 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 93.1818 | 93.1818 | 93.1818 | 91.8519 | 41 | 3 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3415 | 99.4350 | 99.2481 | 82.1297 | 528 | 3 | 528 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | * | 98.4539 | 98.0645 | 98.8464 | 84.0977 | 1368 | 27 | 1371 | 16 | 8 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | het | 98.1972 | 97.4074 | 99.0000 | 84.3750 | 789 | 21 | 792 | 8 | 5 | 62.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 93.3333 | 93.3333 | 93.3333 | 91.9065 | 42 | 3 | 42 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.2606 | 99.4444 | 99.0775 | 82.2062 | 537 | 3 | 537 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | * | 98.3897 | 98.3871 | 98.3923 | 88.1388 | 305 | 5 | 306 | 5 | 1 | 20.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | het | 98.4224 | 97.3958 | 99.4709 | 88.5938 | 187 | 5 | 188 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 80.0000 | 100.0000 | 66.6667 | 96.2733 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 99.1304 | 100.0000 | 98.2759 | 85.5721 | 114 | 0 | 114 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.4869 | 97.9518 | 99.0279 | 85.4026 | 813 | 17 | 815 | 8 | 3 | 37.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | het | 98.1263 | 96.9136 | 99.3697 | 85.6928 | 471 | 15 | 473 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 91.8919 | 100.0000 | 85.0000 | 94.2029 | 17 | 0 | 17 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.3884 | 99.3884 | 99.3884 | 83.3672 | 325 | 2 | 325 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.4753 | 97.8996 | 99.0577 | 86.5940 | 839 | 18 | 841 | 8 | 3 | 37.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e0 | het | 98.0644 | 96.7807 | 99.3827 | 86.9285 | 481 | 16 | 483 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 92.6829 | 100.0000 | 86.3636 | 94.4862 | 19 | 0 | 19 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.4135 | 99.4135 | 99.4135 | 84.6119 | 339 | 2 | 339 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e1 | * | 98.4982 | 97.9310 | 99.0719 | 86.7466 | 852 | 18 | 854 | 8 | 3 | 37.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e1 | het | 98.1069 | 96.8504 | 99.3964 | 86.9861 | 492 | 16 | 494 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 92.6829 | 100.0000 | 86.3636 | 94.6860 | 19 | 0 | 19 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.4169 | 99.4169 | 99.4169 | 84.8965 | 341 | 2 | 341 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | * | 98.3003 | 98.2955 | 98.3051 | 91.4286 | 173 | 3 | 174 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | het | 98.0997 | 97.1698 | 99.0476 | 92.0814 | 103 | 3 | 104 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 96.7480 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 88.9610 | 67 | 0 | 67 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m1_e0 | * | 98.2131 | 97.6285 | 98.8048 | 88.8071 | 494 | 12 | 496 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m1_e0 | het | 97.7952 | 96.3211 | 99.3151 | 89.0923 | 288 | 11 | 290 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 90.0000 | 100.0000 | 81.8182 | 95.9707 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2443 | 99.4949 | 98.9950 | 87.0358 | 197 | 1 | 197 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e0 | * | 98.1594 | 97.4952 | 98.8327 | 89.9117 | 506 | 13 | 508 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e0 | het | 97.6995 | 96.1165 | 99.3355 | 90.0232 | 297 | 12 | 299 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 90.0000 | 100.0000 | 81.8182 | 96.5839 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2556 | 99.5025 | 99.0099 | 88.4966 | 200 | 1 | 200 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | * | 98.2012 | 97.5518 | 98.8593 | 89.9733 | 518 | 13 | 520 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | het | 97.7585 | 96.2145 | 99.3528 | 90.0483 | 305 | 12 | 307 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 90.9091 | 100.0000 | 83.3333 | 96.4392 | 10 | 0 | 10 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2665 | 99.5098 | 99.0244 | 88.6364 | 203 | 1 | 203 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m0_e0 | * | 96.0000 | 100.0000 | 92.3077 | 97.7253 | 24 | 0 | 24 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m0_e0 | het | 96.7742 | 100.0000 | 93.7500 | 97.8495 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 98.7500 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.1787 | 9 | 0 | 9 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | * | 95.2830 | 95.2830 | 95.2830 | 95.7275 | 101 | 5 | 101 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | het | 94.9153 | 93.3333 | 96.5517 | 96.2215 | 56 | 4 | 56 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.1481 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.6292 | 97.7273 | 95.5556 | 94.2602 | 43 | 1 | 43 | 2 | 1 | 50.0000 | |