PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
84251-84300 / 86044 show all
rpoplin-dv42SNPtvmap_l150_m0_e0hetalt
75.0000
100.0000
60.0000
94.1176
30322
100.0000
rpoplin-dv42SNPtvmap_l150_m0_e0homalt
98.3607
97.1386
99.6139
76.6034
129038129055
100.0000
rpoplin-dv42SNPtvmap_l150_m1_e0*
98.9126
98.7903
99.0352
73.1204
107801321077810561
58.0952
rpoplin-dv42SNPtvmap_l150_m1_e0het
98.7411
98.8195
98.6628
73.7814
68648268629349
52.6882
rpoplin-dv42SNPtvmap_l150_m1_e0hetalt
93.0233
100.0000
86.9565
87.1508
2002033
100.0000
rpoplin-dv42SNPtvmap_l150_m1_e0homalt
99.2485
98.7329
99.7695
71.6659
389650389699
100.0000
rpoplin-dv42SNPtvmap_l150_m2_e0*
98.9506
98.8287
99.0728
74.8529
112221331122010561
58.0952
rpoplin-dv42SNPtvmap_l150_m2_e0het
98.7872
98.8555
98.7190
75.1931
71698371679349
52.6882
rpoplin-dv42SNPtvmap_l150_m2_e0hetalt
93.0233
100.0000
86.9565
88.7255
2002033
100.0000
rpoplin-dv42SNPtvmap_l150_m2_e0homalt
99.2738
98.7754
99.7773
74.0315
403350403399
100.0000
rpoplin-dv42SNPtvmap_l150_m2_e1*
98.9641
98.8437
99.0847
74.8658
113691331136710561
58.0952
rpoplin-dv42SNPtvmap_l150_m2_e1het
98.8030
98.8704
98.7357
75.2106
72658372639349
52.6882
rpoplin-dv42SNPtvmap_l150_m2_e1hetalt
93.0233
100.0000
86.9565
88.8889
2002033
100.0000
rpoplin-dv42SNPtvmap_l150_m2_e1homalt
99.2828
98.7905
99.7801
74.0325
408450408499
100.0000
rpoplin-dv42SNPtvmap_l250_m0_e0*
96.8421
96.2092
97.4834
91.8033
736297361914
73.6842
rpoplin-dv42SNPtvmap_l250_m0_e0het
97.0280
97.0280
97.0280
91.3647
555175551712
70.5882
rpoplin-dv42SNPtvmap_l250_m0_e0hetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvmap_l250_m0_e0homalt
96.2766
93.7824
98.9071
92.7981
1811218122
100.0000
rpoplin-dv42SNPtvmap_l250_m1_e0*
97.8376
97.4311
98.2476
86.7964
25796825794630
65.2174
rpoplin-dv42SNPtvmap_l250_m1_e0het
97.6497
97.6497
97.6497
86.6731
17454217454226
61.9048
rpoplin-dv42SNPtvmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
95.8333
40400
rpoplin-dv42SNPtvmap_l250_m1_e0homalt
98.2249
96.9626
99.5204
86.9197
8302683044
100.0000
rpoplin-dv42SNPtvmap_l250_m2_e0*
97.9798
97.6058
98.3566
87.5544
28136928134731
65.9574
rpoplin-dv42SNPtvmap_l250_m2_e0het
97.8098
97.8351
97.7846
87.2638
18984218984327
62.7907
rpoplin-dv42SNPtvmap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
95.8333
50500
rpoplin-dv42SNPtvmap_l250_m2_e0homalt
98.3252
97.1185
99.5624
88.0052
9102791044
100.0000
rpoplin-dv42SNPtvmap_l250_m2_e1*
97.9690
97.5995
98.3414
87.6309
28467028464832
66.6667
rpoplin-dv42SNPtvmap_l250_m2_e1het
97.8128
97.8626
97.7631
87.3293
19234219234428
63.6364
rpoplin-dv42SNPtvmap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
95.8333
50500
rpoplin-dv42SNPtvmap_l250_m2_e1homalt
98.2869
97.0402
99.5662
88.1078
9182891844
100.0000
rpoplin-dv42SNPtvmap_siren*
99.5468
99.4818
99.6119
56.8797
456922384568617889
50.0000
rpoplin-dv42SNPtvmap_sirenhet
99.4388
99.4093
99.4683
57.2644
284401692843615265
42.7632
rpoplin-dv42SNPtvmap_sirenhetalt
98.1818
100.0000
96.4286
79.8561
8108133
100.0000
rpoplin-dv42SNPtvmap_sirenhomalt
99.7328
99.5998
99.8662
55.9755
1717169171692321
91.3043
rpoplin-dv42SNPtvsegdup*
99.6835
99.6835
99.6834
91.0590
85052785012712
44.4444
rpoplin-dv42SNPtvsegduphet
99.6497
99.5839
99.7157
91.3241
5265225261150
0.0000
rpoplin-dv42SNPtvsegduphetalt
100.0000
100.0000
100.0000
98.3834
70700
rpoplin-dv42SNPtvsegduphomalt
99.7378
99.8456
99.6302
90.4939
3233532331212
100.0000
rpoplin-dv42SNPtvsegdupwithalt*
0.0000
100.0000
00000
rpoplin-dv42SNPtvsegdupwithalthet
0.0000
100.0000
00000
rpoplin-dv42SNPtvsegdupwithalthetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvsegdupwithalthomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvtech_badpromoters*
98.6111
98.6111
98.6111
48.9362
7117111
100.0000
rpoplin-dv42SNPtvtech_badpromotershet
98.5075
100.0000
97.0588
39.2857
3303311
100.0000
rpoplin-dv42SNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNPtvtech_badpromotershomalt
98.7013
97.4359
100.0000
55.2941
3813800
rpoplin-dv42INDELD6_15map_l100_m2_e1hetalt
92.6471
86.3014
100.0000
73.5294
63106300
rpoplin-dv42INDELD6_15map_l100_m2_e1homalt
97.7444
97.0149
98.4848
85.8974
6526510
0.0000
rpoplin-dv42INDELD6_15map_l125_m0_e0*
97.8723
97.8723
97.8723
93.1785
4614610
0.0000
rpoplin-dv42INDELD6_15map_l125_m0_e0het
96.5517
96.5517
96.5517
93.2715
2812810
0.0000