PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7951-8000 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | ti | map_l125_m2_e1 | het | 99.0933 | 99.3608 | 98.8273 | 75.6520 | 18965 | 122 | 18961 | 225 | 33 | 14.6667 | |
| bgallagher-sentieon | SNP | ti | map_l125_m2_e1 | hetalt | 97.8723 | 95.8333 | 100.0000 | 70.5128 | 23 | 1 | 23 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l125_m2_e1 | homalt | 99.7377 | 99.5724 | 99.9037 | 65.6841 | 11409 | 49 | 11409 | 11 | 9 | 81.8182 | |
| bgallagher-sentieon | SNP | ti | map_l150_m0_e0 | * | 98.8263 | 99.0968 | 98.5573 | 80.5178 | 7790 | 71 | 7788 | 114 | 20 | 17.5439 | |
| bgallagher-sentieon | SNP | ti | map_l150_m0_e0 | het | 98.4386 | 98.9798 | 97.9033 | 83.1082 | 5045 | 52 | 5043 | 108 | 15 | 13.8889 | |
| bgallagher-sentieon | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.2105 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l150_m0_e0 | homalt | 99.5462 | 99.3118 | 99.7817 | 72.6486 | 2742 | 19 | 2742 | 6 | 5 | 83.3333 | |
| bgallagher-sentieon | SNP | ti | map_l150_m1_e0 | * | 99.1792 | 99.3202 | 99.0387 | 75.5864 | 19578 | 134 | 19574 | 190 | 36 | 18.9474 | |
| bgallagher-sentieon | SNP | ti | map_l150_m1_e0 | het | 98.8799 | 99.2158 | 98.5462 | 78.5485 | 12273 | 97 | 12269 | 181 | 29 | 16.0221 | |
| bgallagher-sentieon | SNP | ti | map_l150_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 70.8333 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l150_m1_e0 | homalt | 99.6923 | 99.5087 | 99.8767 | 68.0791 | 7291 | 36 | 7291 | 9 | 7 | 77.7778 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e0 | * | 99.1869 | 99.3321 | 99.0422 | 77.0287 | 20375 | 137 | 20371 | 197 | 37 | 18.7817 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e0 | het | 98.8935 | 99.2392 | 98.5502 | 79.6724 | 12783 | 98 | 12779 | 188 | 30 | 15.9574 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 75.0000 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l150_m2_e0 | homalt | 99.6909 | 99.5011 | 99.8814 | 70.4694 | 7578 | 38 | 7578 | 9 | 7 | 77.7778 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e1 | * | 99.1904 | 99.3389 | 99.0424 | 77.0978 | 20586 | 137 | 20582 | 199 | 37 | 18.5930 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e1 | het | 98.8973 | 99.2470 | 98.5500 | 79.7478 | 12917 | 98 | 12913 | 190 | 30 | 15.7895 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 75.0000 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l150_m2_e1 | homalt | 99.6940 | 99.5060 | 99.8826 | 70.5038 | 7655 | 38 | 7655 | 9 | 7 | 77.7778 | |
| bgallagher-sentieon | SNP | ti | map_l250_m0_e0 | * | 98.1132 | 98.6861 | 97.5469 | 93.1376 | 1352 | 18 | 1352 | 34 | 7 | 20.5882 | |
| bgallagher-sentieon | SNP | ti | map_l250_m0_e0 | het | 97.6670 | 98.6081 | 96.7437 | 93.8565 | 921 | 13 | 921 | 31 | 5 | 16.1290 | |
| bgallagher-sentieon | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | ti | map_l250_m0_e0 | homalt | 99.0805 | 98.8532 | 99.3088 | 90.7522 | 431 | 5 | 431 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | SNP | ti | map_l250_m1_e0 | * | 98.5526 | 98.8862 | 98.2213 | 89.0457 | 4528 | 51 | 4528 | 82 | 19 | 23.1707 | |
| bgallagher-sentieon | SNP | ti | map_l250_m1_e0 | het | 98.1612 | 98.9218 | 97.4121 | 90.4001 | 2936 | 32 | 2936 | 78 | 16 | 20.5128 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0886 | 98.9484 | 99.2292 | 67.4228 | 3858 | 41 | 3862 | 30 | 18 | 60.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2083 | 99.4128 | 99.0047 | 74.3003 | 1693 | 10 | 1691 | 17 | 5 | 29.4118 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.6559 | 97.3475 | 100.0000 | 41.6139 | 1101 | 30 | 1107 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3464 | 99.9061 | 98.7929 | 68.3700 | 1064 | 1 | 1064 | 13 | 13 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.7495 | 94.0520 | 99.6063 | 76.6972 | 253 | 16 | 253 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.5774 | 90.1961 | 97.2222 | 94.2215 | 46 | 5 | 35 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.3995 | 94.9309 | 100.0000 | 38.5269 | 206 | 11 | 217 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.1228 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5235 | 99.4286 | 99.6187 | 61.7293 | 1044 | 6 | 1045 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5738 | 99.3617 | 99.7868 | 68.2894 | 467 | 3 | 468 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5185 | 99.0415 | 100.0000 | 33.4764 | 310 | 3 | 310 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4413 | 100.0000 | 98.8889 | 66.0804 | 267 | 0 | 267 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.8776 | 92.0000 | 95.8333 | 61.9048 | 23 | 2 | 23 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 91.1765 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 12.5000 | 21 | 2 | 21 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m0_e0 | * | 98.5355 | 98.8950 | 98.1785 | 84.8343 | 537 | 6 | 539 | 10 | 3 | 30.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m0_e0 | het | 98.1651 | 98.1595 | 98.1707 | 86.4351 | 320 | 6 | 322 | 6 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1298 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 80.2054 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m1_e0 | * | 98.9183 | 98.8798 | 98.9568 | 83.1237 | 1324 | 15 | 1328 | 14 | 4 | 28.5714 | |