PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7651-7700 / 86044 show all
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9129
99.8992
99.9266
60.1913
10900111089685
62.5000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.9002
99.8860
99.9144
60.6431
70118700763
50.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3344
38843388422
100.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
98.6738
99.8792
97.4971
38.9618
7443974401913
1.5707
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
97.9485
99.8507
96.1175
40.3651
4682746791891
0.5291
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
64.2857
50500
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
36.2312
27562275622
100.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
97.6190
97.6190
97.6190
89.3939
4114110
0.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_51to200het
97.2222
97.2222
97.2222
88.3117
3513510
0.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
93.1818
60600
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.6672
99.8841
99.4512
37.3053
344643443192
10.5263
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.5336
99.9532
99.1175
38.8352
213712134192
10.5263
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
34.5500
13092130900
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5507
10100
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2143
10100
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtvmap_l100_m0_e0*
98.9757
99.3865
98.5682
71.0162
11016681101516025
15.6250
bgallagher-sentieonSNPtvmap_l100_m0_e0het
98.6394
99.3908
97.8993
74.3366
717844717715421
13.6364
bgallagher-sentieonSNPtvmap_l100_m0_e0hetalt
96.7742
93.7500
100.0000
68.7500
1511500
bgallagher-sentieonSNPtvmap_l100_m0_e0homalt
99.6221
99.4020
99.8433
61.4866
382323382364
66.6667
bgallagher-sentieonSNPtvmap_l100_m1_e0*
99.3526
99.5959
99.1104
66.8404
24402992439821931
14.1553
bgallagher-sentieonSNPtvmap_l100_m1_e0het
99.1089
99.5719
98.6501
70.0769
15351661534721025
11.9048
bgallagher-sentieonSNPtvmap_l100_m1_e0hetalt
97.5000
95.1220
100.0000
70.4545
3923900
bgallagher-sentieonSNPtvmap_l100_m1_e0homalt
99.7786
99.6572
99.9002
59.2105
901231901296
66.6667
bgallagher-sentieonSNPtvmap_l100_m2_e0*
99.3603
99.6045
99.1174
68.4796
24934992493022231
13.9640
bgallagher-sentieonSNPtvmap_l100_m2_e0het
99.1197
99.5817
98.6621
71.4019
15711661570721325
11.7371
bgallagher-sentieonSNPtvmap_l100_m2_e0hetalt
97.5610
95.2381
100.0000
72.7891
4024000
bgallagher-sentieonSNPtvmap_l100_m2_e0homalt
99.7827
99.6636
99.9021
61.6697
918331918396
66.6667
bgallagher-sentieonSNPtvmap_l100_m2_e1*
99.3647
99.6084
99.1222
68.5080
25184992518022331
13.9013
bgallagher-sentieonSNPtvmap_l100_m2_e1het
99.1255
99.5859
98.6693
71.4407
15872661586821425
11.6822
bgallagher-sentieonSNPtvmap_l100_m2_e1hetalt
97.6190
95.3488
100.0000
72.2973
4124100
bgallagher-sentieonSNPtvmap_l100_m2_e1homalt
99.7847
99.6667
99.9030
61.6624
927131927196
66.6667
bgallagher-sentieonSNPtvmap_l125_m0_e0*
98.6421
99.1555
98.1340
76.7581
657556657412519
15.2000
bgallagher-sentieonSNPtvmap_l125_m0_e0het
98.2208
99.1138
97.3437
79.3814
436239436111915
12.6050
bgallagher-sentieonSNPtvmap_l125_m0_e0hetalt
94.1176
88.8889
100.0000
77.1429
81800
bgallagher-sentieonSNPtvmap_l125_m0_e0homalt
99.5036
99.2796
99.7286
68.6827
220516220564
66.6667
bgallagher-sentieonSNPtvmap_l125_m1_e0*
99.1503
99.4630
98.8396
71.8727
15930861592818728
14.9733
bgallagher-sentieonSNPtvmap_l125_m1_e0het
98.8364
99.4173
98.2622
74.9493
10067591006517822
12.3596