PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 148 149 150 151 152 153 154 155 156 ... 1720 1721 » 7551-7600 / 86044 show all
bgallagher-sentieon	SNP	ti	map_siren	*	99.6181	99.6801	99.5561	54.0168	100034	321	100019	446	66	14.7982
bgallagher-sentieon	SNP	ti	map_siren	het	99.4766	99.6377	99.3160	56.6817	62156	226	62147	428	50	11.6822
bgallagher-sentieon	SNP	ti	map_siren	hetalt	98.2143	96.4912	100.0000	68.3908	55	2	55	0	0
bgallagher-sentieon	SNP	ti	map_siren	homalt	99.8535	99.7547	99.9524	48.7705	37823	93	37817	18	16	88.8889
bgallagher-sentieon	SNP	ti	segdup	*	99.5103	99.8567	99.1663	89.5899	19509	28	19507	164	6	3.6585
bgallagher-sentieon	SNP	ti	segdup	het	99.2686	99.8587	98.6854	90.5804	12013	17	12011	160	2	1.2500
bgallagher-sentieon	SNP	ti	segdup	hetalt	100.0000	100.0000	100.0000	98.5185	2	0	2	0	0
bgallagher-sentieon	SNP	ti	segdup	homalt	99.9000	99.8534	99.9467	87.4231	7494	11	7494	4	4	100.0000
bgallagher-sentieon	SNP	ti	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	ti	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	ti	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	ti	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	ti	tech_badpromoters	*	98.2249	97.6471	98.8095	45.0980	83	2	83	1	1	100.0000
bgallagher-sentieon	SNP	ti	tech_badpromoters	het	97.6744	95.4545	100.0000	48.1481	42	2	42	0	0
bgallagher-sentieon	SNP	ti	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
bgallagher-sentieon	SNP	ti	tech_badpromoters	homalt	98.7952	100.0000	97.6190	41.6667	41	0	41	1	1	100.0000
bgallagher-sentieon	SNP	tv	*	*	99.8908	99.9655	99.8163	21.9055	969355	335	969269	1784	78	4.3722
bgallagher-sentieon	SNP	tv	*	het	99.8318	99.9594	99.7045	23.0898	591456	240	591385	1753	53	3.0234
bgallagher-sentieon	SNP	tv	*	hetalt	99.7699	99.5408	100.0000	40.6164	867	4	867	0	0
bgallagher-sentieon	SNP	tv	*	homalt	99.9838	99.9759	99.9918	19.9074	377032	91	377017	31	25	80.6452
bgallagher-sentieon	SNP	tv	HG002complexvar	*	99.9492	99.9313	99.9671	22.0213	245983	169	245892	81	31	38.2716
bgallagher-sentieon	SNP	tv	HG002complexvar	het	99.9389	99.9237	99.9542	21.4883	150616	115	150540	69	21	30.4348
bgallagher-sentieon	SNP	tv	HG002complexvar	hetalt	99.6764	99.3548	100.0000	35.9667	308	2	308	0	0
bgallagher-sentieon	SNP	tv	HG002complexvar	homalt	99.9663	99.9453	99.9874	22.7972	95059	52	95044	12	10	83.3333
bgallagher-sentieon	SNP	tv	HG002compoundhet	*	99.7142	99.7422	99.6862	48.7920	8900	23	8895	28	11	39.2857
bgallagher-sentieon	SNP	tv	HG002compoundhet	het	99.6043	99.6576	99.5511	55.0192	4657	16	4657	21	5	23.8095
bgallagher-sentieon	SNP	tv	HG002compoundhet	hetalt	99.7674	99.5360	100.0000	22.4231	858	4	858	0	0
bgallagher-sentieon	SNP	tv	HG002compoundhet	homalt	99.8524	99.9115	99.7933	42.7775	3385	3	3380	7	6	85.7143
bgallagher-sentieon	SNP	tv	decoy	*		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	tv	decoy	het		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	tv	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	tv	decoy	homalt		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	tv	func_cds	*	99.8287	100.0000	99.6579	29.0453	4371	0	4370	15	0	0.0000
bgallagher-sentieon	SNP	tv	func_cds	het	99.7184	100.0000	99.4384	31.4601	2657	0	2656	15	0	0.0000
bgallagher-sentieon	SNP	tv	func_cds	hetalt	100.0000	100.0000	100.0000	56.5217	10	0	10	0	0
bgallagher-sentieon	SNP	tv	func_cds	homalt	100.0000	100.0000	100.0000	24.6018	1704	0	1704	0	0
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3053	99.0106	99.6019	68.7862	1501	15	1501	6	1	16.6667
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.9879	98.5887	99.3902	70.7665	978	14	978	6	1	16.6667
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.9045	99.8092	100.0000	64.1043	523	1	523	0	0
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4994	99.8555	99.1459	64.4153	27638	40	27628	238	20	8.4034
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2725	99.8634	98.6886	65.8031	17544	24	17534	233	15	6.4378
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.0000	92.3077	100.0000	82.3529	12	1	12	0	0
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9009	99.8514	99.9504	61.6260	10082	15	10082	5	5	100.0000
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.1996	99.5127	98.8884	74.7272	14500	71	14500	163	14	8.5890
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.8517	99.4416	98.2688	76.2612	9082	51	9082	160	11	6.8750

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge