PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7401-7450 / 86044 show all
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.8256
97.5251
96.1361
70.1065
1737844118561746415
55.6300
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.5812
92.6383
98.7173
34.2439
12999103313853180164
91.1111
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
96.8292
99.0334
94.7210
60.8998
1137311111986668500
74.8503
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.9134
96.6320
97.1965
74.4490
6315022016587219001174
61.7895
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.1594
97.2539
97.0650
73.4982
2964383730823932445
47.7468
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.8883
93.1278
98.8175
40.7349
15557114816463197178
90.3553
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.3939
98.8110
96.0169
66.9230
1795021618586771551
71.4656
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50*
97.2439
97.3027
97.1852
57.6417
35605987382561108730
65.8845
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50het
97.4857
98.0964
96.8826
61.5590
1546030016751539278
51.5770
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
96.2978
94.0048
98.7055
32.8581
984762810599139132
94.9640
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
97.7920
99.4303
96.2068
45.3054
102985910906430320
74.4186
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200*
82.8529
82.0562
83.6653
62.9041
17243771680328287
87.5000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200het
77.8716
90.2041
68.5057
80.6495
44248298137123
89.7810
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
84.6939
74.8403
97.5355
31.8035
93731510292623
88.4615
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
79.7448
96.1003
68.1467
47.3577
34514353165141
85.4545
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.4435
99.1224
99.7666
66.9356
28012248282076617
25.7576
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.3035
98.8131
99.7988
59.4317
1623419516370333
9.0909
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.8256
96.4486
99.2424
73.9001
5161952444
100.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7217
99.6990
99.7443
56.4874
1126234113132910
34.4828
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10*
92.4647
88.7097
96.5517
99.9368
1101411240
0.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
89.7542
85.0575
95.0000
99.9024
74137640
0.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
96.7742
93.7500
100.0000
99.8973
1511500
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.9636
2102100
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
98.6420
98.4090
98.8761
66.2789
195463162023523048
20.8696
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
98.5442
98.3435
98.7456
63.1402
109241841133614415
10.4167
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.2955
97.2036
99.4122
43.2207
26077527061610
62.5000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.9717
99.0613
98.8823
57.7880
60155761937023
32.8571
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
95.3387
95.0659
95.6131
74.9211
2524131265912256
45.9016
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
94.5134
94.8347
94.1942
82.6140
918509415819
32.7586
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.2904
94.1423
98.5390
34.0824
11257012141814
77.7778
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
94.6012
97.7642
91.6364
62.8378
481115044623
50.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.0488
98.8712
99.2269
57.4163
66577669315410
18.5185
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50het
98.7828
98.3598
99.2095
53.1018
3598603765304
13.3333
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5679
99.2416
99.8964
30.1737
916796411
100.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.2731
99.5818
98.9663
47.1998
214392202235
21.7391
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200*
94.1091
95.0450
93.1915
72.5788
21111219164
25.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200het
87.6190
92.0000
83.6364
85.0949
4644692
22.2222
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
97.1193
94.4000
100.0000
28.7356
118712400
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200homalt
93.3333
100.0000
87.5000
56.9231
4704972
28.5714
asubramanian-gatkINDEL*map_l100_m0_e0*
91.6436
88.3557
95.1857
96.6934
13811821384708
11.4286
asubramanian-gatkINDEL*map_l100_m0_e0het
89.7495
86.5818
93.1579
91.0990
884137885656
9.2308
asubramanian-gatkINDEL*map_l100_m0_e0hetalt
95.2381
90.9091
100.0000
91.8159
3033200
asubramanian-gatkINDEL*map_l100_m0_e0homalt
95.2090
91.7485
98.9407
86.3268
4674246752
40.0000
asubramanian-gatkINDEL*map_l100_m1_e0*
92.0378
87.7579
96.7564
95.8853
3147439316210617
16.0377
asubramanian-gatkINDEL*map_l100_m1_e0het
89.5146
84.5190
95.1378
89.5888
188934618989713
13.4021
asubramanian-gatkINDEL*map_l100_m1_e0hetalt
94.5744
91.1290
98.2906
87.2964
1131111521
50.0000