PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7301-7350 / 86044 show all
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.9924
10100
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.3362
98.9137
99.7624
51.3621
11746129117562814
50.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.2900
98.8833
99.7000
54.0745
6641756647207
35.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.8858
98.0576
99.7281
33.7984
146429146743
75.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6034
99.3181
99.8903
51.3153
364125364244
100.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
97.1659
95.8604
98.5075
61.5311
11815111881814
77.7778
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200het
96.6923
95.5844
97.8261
79.5669
3681736087
87.5000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.9530
95.0769
98.9045
23.1047
6183263275
71.4286
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
98.7380
98.9848
98.4925
60.4374
195219632
66.6667
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.5939
99.2396
99.9506
44.1181
404631405021
50.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
99.3838
98.8184
99.9558
47.5296
225827226110
0.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.6750
99.5671
99.7831
30.2572
460246011
100.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.9248
99.8496
100.0000
41.6849
13282132900
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
95.9459
94.6667
97.2603
65.5660
7147121
50.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_51to200het
96.2963
100.0000
92.8571
87.8261
1301310
0.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
95.7447
91.8367
100.0000
26.2295
4544500
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
96.2963
100.0000
92.8571
61.1111
1301311
100.0000
asubramanian-gatkINDELD1_5map_l100_m0_e0*
92.4081
90.2665
94.6537
88.7322
77984779445
11.3636
asubramanian-gatkINDELD1_5map_l100_m0_e0het
91.2220
89.6785
92.8196
89.5670
53061530414
9.7561
asubramanian-gatkINDELD1_5map_l100_m0_e0hetalt
92.3077
85.7143
100.0000
94.2857
1221200
asubramanian-gatkINDELD1_5map_l100_m0_e0homalt
95.1807
91.8605
98.7500
85.1943
2372123731
33.3333
asubramanian-gatkINDELD1_5map_l100_m1_e0*
92.8980
89.5022
96.5618
87.1490
16541941657597
11.8644
asubramanian-gatkINDELD1_5map_l100_m1_e0het
90.9054
87.1795
94.9640
88.1323
10541551056566
10.7143
asubramanian-gatkINDELD1_5map_l100_m1_e0hetalt
96.7033
93.6170
100.0000
91.0020
4434400
asubramanian-gatkINDELD1_5map_l100_m1_e0homalt
96.6121
93.9189
99.4643
83.9725
5563655731
33.3333
asubramanian-gatkINDELD1_5map_l100_m2_e0*
93.0444
89.7128
96.6330
87.5446
17181971722607
11.6667
asubramanian-gatkINDEL***
98.8418
98.5404
99.1451
71.3671
339513502933944229271779
60.7790
asubramanian-gatkINDEL**het
98.9698
98.6849
99.2562
61.7813
19158025531912381433589
41.1026
asubramanian-gatkINDEL**hetalt
95.6373
92.5665
98.9188
59.3274
23361187623605258236
91.4729
asubramanian-gatkINDEL**homalt
99.2686
99.5207
99.0178
58.9491
1245726001245991236954
77.1845
asubramanian-gatkINDEL*HG002complexvar*
98.8559
98.4299
99.2857
62.5855
75730120875611544244
44.8529
asubramanian-gatkINDEL*HG002complexvarhet
98.7623
98.2061
99.3248
58.2604
453838294501430659
19.2810
asubramanian-gatkINDEL*HG002complexvarhetalt
95.4215
93.3225
97.6172
69.3301
345224736879084
93.3333
asubramanian-gatkINDEL*HG002complexvarhomalt
99.4823
99.5116
99.4530
57.3903
2689513226910148101
68.2432
asubramanian-gatkINDEL*HG002compoundhet*
93.4362
93.2377
93.6356
65.8907
2793420262783618921575
83.2452
asubramanian-gatkINDEL*HG002compoundhethet
90.4926
96.2872
85.3557
79.1653
39421523707636459
72.1698
asubramanian-gatkINDEL*HG002compoundhethetalt
95.7396
92.5814
99.1208
52.6709
23312186823449208188
90.3846
asubramanian-gatkINDEL*HG002compoundhethomalt
56.3380
99.1254
39.3519
82.7957
68066801048928
88.5496
asubramanian-gatkINDEL*decoy*
100.0000
100.0000
100.0000
99.9865
1001000
asubramanian-gatkINDEL*decoyhet
100.0000
100.0000
100.0000
99.9667
60600
asubramanian-gatkINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8285
10100
asubramanian-gatkINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9307
30300
asubramanian-gatkINDEL*func_cds*
98.8729
98.4270
99.3228
86.9360
438744031
33.3333
asubramanian-gatkINDEL*func_cdshet
98.5959
98.1308
99.0654
61.0909
210421220
0.0000
asubramanian-gatkINDEL*func_cdshetalt
88.8889
80.0000
100.0000
63.6364
41400