PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7201-7250 / 86044 show all
asubramanian-gatkINDELD16_PLUSsegduphetalt
87.5000
77.7778
100.0000
93.0233
72900
asubramanian-gatkINDELD16_PLUSsegduphomalt
100.0000
100.0000
100.0000
96.7568
1201200
asubramanian-gatkINDELD16_PLUSsegdupwithalt*
0.0000
100.0000
00000
asubramanian-gatkINDELD16_PLUSsegdupwithalthet
0.0000
100.0000
00000
asubramanian-gatkINDELD16_PLUSsegdupwithalthetalt
0.0000
100.0000
00000
asubramanian-gatkINDELD16_PLUSsegdupwithalthomalt
0.0000
100.0000
00000
asubramanian-gatkINDELD16_PLUStech_badpromoters*
85.7143
75.0000
100.0000
50.0000
31300
asubramanian-gatkINDELD16_PLUStech_badpromotershet
85.7143
75.0000
100.0000
0.0000
31300
asubramanian-gatkINDELD16_PLUStech_badpromotershetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELD16_PLUStech_badpromotershomalt
0.0000
100.0000
00000
asubramanian-gatkINDELD1_5**
99.2637
98.9281
99.6016
61.0980
1451721573145253581383
65.9208
asubramanian-gatkINDELD1_5*het
99.3754
99.1025
99.6499
59.9427
8678878686804305126
41.3115
asubramanian-gatkINDELD1_5*hetalt
96.4051
93.9092
99.0373
64.2371
962162496709488
93.6170
asubramanian-gatkINDELD1_5*homalt
99.6476
99.6668
99.6283
62.3701
4876316348779182169
92.8571
asubramanian-gatkINDELD1_5HG002complexvar*
99.2090
98.6948
99.7287
58.8075
32288427323478875
85.2273
asubramanian-gatkINDELD1_5HG002complexvarhet
99.2391
98.6082
99.8781
56.4759
20476289204842515
60.0000
asubramanian-gatkINDELD1_5HG002complexvarhetalt
94.5568
92.7515
96.4339
73.6698
12549812984847
97.9167
asubramanian-gatkINDELD1_5HG002complexvarhomalt
99.7403
99.6226
99.8582
60.0860
1055840105651513
86.6667
asubramanian-gatkINDELD1_5HG002compoundhet*
95.6905
94.4340
96.9809
66.6013
1155468111564360339
94.1667
asubramanian-gatkINDELD1_5HG002compoundhethet
95.2389
96.5856
93.9292
78.7201
1669591671108103
95.3704
asubramanian-gatkINDELD1_5HG002compoundhethetalt
96.4959
93.9311
99.2046
59.5968
959662096047771
92.2078
asubramanian-gatkINDELD1_5HG002compoundhethomalt
76.5563
99.3127
62.2845
86.2762
2892289175165
94.2857
asubramanian-gatkINDELD1_5decoy*
100.0000
100.0000
100.0000
99.9607
40400
asubramanian-gatkINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9759
20200
asubramanian-gatkINDELD1_5decoyhetalt
100.0000
100.0000
100.0000
99.6183
10100
asubramanian-gatkINDELD1_5decoyhomalt
100.0000
100.0000
100.0000
99.9387
10100
asubramanian-gatkINDELD1_5func_cds*
100.0000
100.0000
100.0000
50.6173
159016000
asubramanian-gatkINDELD1_5func_cdshet
100.0000
100.0000
100.0000
59.8131
8508600
asubramanian-gatkINDELD1_5func_cdshetalt
0.0000
100.0000
00000
asubramanian-gatkINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
32.1101
7407400
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.0814
91.6918
96.5990
62.3710
36533313664129115
89.1473
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
95.7489
95.0355
96.4732
75.4199
13407013134837
77.0833
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.2194
86.3886
98.8943
32.6995
157424816101816
88.8889
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.1198
98.2713
92.1642
62.1469
739137416362
98.4127
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.8741
1101100
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7421
80800
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.2973
10100
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3421
20200
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9428
98.4681
99.4221
74.5651
6344498763485369305
82.6558
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1330
98.7273
99.5420
75.3696
3281342332819151102
67.5497
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.9370
94.9441
99.0153
65.4795
882647088498883
94.3182
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4891
99.5708
99.4077
75.9619
218059421817130120
92.3077
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7710
96.8925
98.6656
61.3340
3043297630464412353
85.6796
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.3287
97.7902
98.8731
68.6335
1345330413424153111
72.5490
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1607
93.4776
99.0024
33.2299
868560687338882
93.1818
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.5930
99.2105
97.9830
63.7025
8294668307171160
93.5673
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.1512
96.0630
98.2644
67.2067
73230736138
61.5385
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
97.4707
97.2414
97.7011
69.7917
42312425105
50.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
88.0126
79.7101
98.2456
58.3942
55145611
100.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.8342
98.4496
99.2218
63.6492
254425522
100.0000