PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
6451-6500 / 86044 show all
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
24.0000
100.0000
13.6364
80.3571
303190
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.5646
99.1989
99.9329
79.3662
148612149011
100.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.2216
97.3921
99.0654
77.9808
141913801420413416
11.9403
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.9134
97.0765
98.7647
80.5287
8866267887511113
11.7117
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
60.0000
100.0000
42.8571
84.3049
15015200
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.9195
97.9163
99.9436
71.6321
5310113531433
100.0000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.1035
98.9086
99.2991
66.9100
48035348173412
35.2941
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50het
99.1727
98.8666
99.4807
69.4042
30533530651611
68.7500
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
10.5263
100.0000
5.5556
80.4348
101170
0.0000
asubramanian-gatkINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.0000
81.8182
00020
0.0000
asubramanian-gatkINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
0.0000
0.0000
76.5823
000370
0.0000
asubramanian-gatkINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
80.1782
0001780
0.0000
asubramanian-gatkINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
80.4382
0001250
0.0000
asubramanian-gatkINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
82.3529
00030
0.0000
asubramanian-gatkINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
79.3388
000500
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_diTR_11to50*
0.0000
0.0000
75.5556
000990
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_diTR_11to50het
0.0000
0.0000
74.6622
000750
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
0.0000
83.3333
00010
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_diTR_11to50homalt
0.0000
0.0000
77.6699
000230
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_diTR_51to200*
0.0000
0.0000
84.3750
00050
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_diTR_51to200het
0.0000
0.0000
90.4762
00020
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
0.0000
66.6667
00030
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_homopolymer_6to10*
0.0000
100.0000
00000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_homopolymer_6to10het
0.0000
100.0000
00000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
0.0000
100.0000
00000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
0.0000
96.7742
10020
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
0.0000
95.9184
10020
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_quadTR_11to50*
0.0000
0.0000
80.0000
000470
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_quadTR_11to50het
0.0000
0.0000
81.0056
000340
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.0000
66.6667
00010
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
0.0000
0.0000
77.3585
000120
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_quadTR_51to200*
0.0000
0.0000
88.3212
000160
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_quadTR_51to200het
0.0000
0.0000
91.2621
00090
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
66.6667
00010
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
0.0000
0.0000
80.6452
00060
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_triTR_11to50*
0.0000
0.0000
78.4314
000110
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_triTR_11to50het
0.0000
0.0000
80.6452
00060
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
00000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_triTR_11to50homalt
0.0000
0.0000
73.6842
00050
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_triTR_51to200*
0.0000
0.0000
88.8889
00010
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_triTR_51to200het
0.0000
0.0000
85.7143
00010
0.0000
asubramanian-gatkINDELC6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000