PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5801-5850 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 99.5951 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 99.3151 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 99.6000 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 99.3197 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I16_PLUS | map_siren | * | 91.5949 | 88.3721 | 95.0617 | 93.1761 | 76 | 10 | 77 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_siren | het | 89.3617 | 85.7143 | 93.3333 | 93.1921 | 42 | 7 | 42 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.0968 | 15 | 1 | 16 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_siren | homalt | 92.6829 | 90.4762 | 95.0000 | 95.0249 | 19 | 2 | 19 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | segdup | * | 95.6522 | 93.6170 | 97.7778 | 96.4143 | 44 | 3 | 44 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | segdup | het | 97.8723 | 95.8333 | 100.0000 | 96.8536 | 23 | 1 | 23 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | segdup | hetalt | 75.0000 | 75.0000 | 75.0000 | 97.4522 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 95.0954 | 18 | 1 | 18 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 73.3333 | 4 | 0 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | * | * | 99.0996 | 98.6108 | 99.5933 | 59.2515 | 148571 | 2093 | 148648 | 607 | 454 | 74.7941 | |
| asubramanian-gatk | INDEL | I1_5 | * | het | 99.1412 | 98.6564 | 99.6308 | 61.4273 | 77979 | 1062 | 77980 | 289 | 149 | 51.5571 | |
| asubramanian-gatk | INDEL | I1_5 | * | hetalt | 96.2314 | 93.2470 | 99.4133 | 63.4018 | 10439 | 756 | 10505 | 62 | 58 | 93.5484 | |
| asubramanian-gatk | INDEL | I1_5 | * | homalt | 99.5606 | 99.5449 | 99.5763 | 55.0778 | 60153 | 275 | 60163 | 256 | 247 | 96.4844 | |
| asubramanian-gatk | INDEL | I1_5 | HG002complexvar | * | 99.2344 | 98.6572 | 99.8183 | 57.3625 | 32915 | 448 | 32967 | 60 | 50 | 83.3333 | |
| asubramanian-gatk | INDEL | I1_5 | HG002complexvar | het | 99.1051 | 98.3342 | 99.8882 | 58.4164 | 17886 | 303 | 17868 | 20 | 13 | 65.0000 | |
| asubramanian-gatk | INDEL | I1_5 | HG002complexvar | hetalt | 97.2967 | 95.4229 | 99.2455 | 71.3930 | 1647 | 79 | 1710 | 13 | 11 | 84.6154 | |
| asubramanian-gatk | INDEL | I1_5 | HG002complexvar | homalt | 99.6538 | 99.5092 | 99.7987 | 52.7938 | 13382 | 66 | 13389 | 27 | 26 | 96.2963 | |
| asubramanian-gatk | INDEL | I1_5 | HG002compoundhet | * | 95.2373 | 93.5902 | 96.9436 | 67.0365 | 11564 | 792 | 11577 | 365 | 350 | 95.8904 | |
| asubramanian-gatk | INDEL | I1_5 | HG002compoundhet | het | 93.5851 | 96.0000 | 91.2888 | 86.8239 | 816 | 34 | 765 | 73 | 70 | 95.8904 | |
| asubramanian-gatk | INDEL | I1_5 | HG002compoundhet | hetalt | 96.2877 | 93.2540 | 99.5255 | 58.2114 | 10423 | 754 | 10487 | 50 | 46 | 92.0000 | |
| asubramanian-gatk | INDEL | I1_5 | HG002compoundhet | homalt | 72.5446 | 98.7842 | 57.3192 | 87.8143 | 325 | 4 | 325 | 242 | 234 | 96.6942 | |
| asubramanian-gatk | INDEL | I1_5 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I1_5 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I1_5 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I1_5 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I1_5 | func_cds | * | 99.1720 | 99.4444 | 98.9011 | 44.5122 | 179 | 1 | 180 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | func_cds | het | 98.3607 | 100.0000 | 96.7742 | 59.4771 | 59 | 0 | 60 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | func_cds | homalt | 99.5781 | 99.1597 | 100.0000 | 31.3953 | 118 | 1 | 118 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.6118 | 90.0651 | 97.4492 | 65.8974 | 1659 | 183 | 1872 | 49 | 41 | 83.6735 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.7581 | 95.3172 | 98.2432 | 76.2972 | 631 | 31 | 727 | 13 | 8 | 61.5385 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 90.9078 | 83.8350 | 99.2840 | 42.0470 | 752 | 145 | 832 | 6 | 5 | 83.3333 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.2859 | 97.5265 | 91.2536 | 67.7934 | 276 | 7 | 313 | 30 | 28 | 93.3333 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.7315 | 1 | 0 | 2 | 0 | 0 | ||