PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5401-5450 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 92.4584 | 97.6813 | 87.7658 | 87.3735 | 2654 | 63 | 2683 | 374 | 17 | 4.5455 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.0177 | 97.5624 | 88.8776 | 88.4848 | 1721 | 43 | 1742 | 218 | 16 | 7.3395 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 10.5263 | 100.0000 | 5.5556 | 77.5000 | 2 | 0 | 2 | 34 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 92.9624 | 97.8970 | 88.5014 | 84.9075 | 931 | 20 | 939 | 122 | 1 | 0.8197 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 93.2622 | 98.0574 | 88.9141 | 86.8298 | 2322 | 46 | 2350 | 293 | 14 | 4.7782 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.7915 | 98.1506 | 89.8032 | 88.0725 | 1486 | 28 | 1506 | 171 | 13 | 7.6023 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 14.2857 | 100.0000 | 7.6923 | 79.6875 | 2 | 0 | 2 | 24 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.5466 | 97.8873 | 89.5745 | 84.0136 | 834 | 18 | 842 | 98 | 1 | 1.0204 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.4310 | 98.7964 | 96.1027 | 79.7737 | 10671 | 130 | 10702 | 434 | 19 | 4.3779 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.4385 | 98.6779 | 96.2299 | 81.4052 | 6792 | 91 | 6815 | 267 | 17 | 6.3670 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 15.0000 | 100.0000 | 8.1081 | 79.4444 | 3 | 0 | 3 | 34 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.8328 | 99.0038 | 96.6891 | 76.0765 | 3876 | 39 | 3884 | 133 | 2 | 1.5038 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.6076 | 97.1467 | 98.0729 | 73.4952 | 44398 | 1304 | 44428 | 873 | 38 | 4.3528 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4185 | 97.0953 | 97.7438 | 76.1583 | 27878 | 834 | 27900 | 644 | 34 | 5.2795 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 44.7761 | 100.0000 | 28.8462 | 82.9508 | 15 | 0 | 15 | 37 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.0342 | 97.2312 | 98.8506 | 67.1730 | 16505 | 470 | 16513 | 192 | 4 | 2.0833 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.5888 | 98.8754 | 96.3352 | 68.5340 | 9583 | 109 | 9621 | 366 | 21 | 5.7377 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.8322 | 98.8294 | 96.8550 | 70.8320 | 6163 | 73 | 6190 | 201 | 20 | 9.9503 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 6.8966 | 100.0000 | 3.5714 | 80.5556 | 1 | 0 | 1 | 27 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.5247 | 98.9580 | 96.1323 | 63.1557 | 3419 | 36 | 3430 | 138 | 1 | 0.7246 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 77.2277 | 92.8571 | 66.1017 | 96.4046 | 39 | 3 | 39 | 20 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 87.2727 | 88.8889 | 85.7143 | 97.6549 | 24 | 3 | 24 | 4 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 7 | 0 | 0.0000 | ||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 76.9231 | 100.0000 | 62.5000 | 94.2721 | 15 | 0 | 15 | 9 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2719 | 98.8007 | 99.7476 | 56.4979 | 16971 | 206 | 16992 | 43 | 6 | 13.9535 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3297 | 98.9174 | 99.7455 | 57.3296 | 10964 | 120 | 10972 | 28 | 3 | 10.7143 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6842 | 5 | 0 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.1659 | 98.5874 | 99.7512 | 54.8686 | 6002 | 86 | 6015 | 15 | 3 | 20.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.4506 | 98.8726 | 98.0323 | 41.8823 | 17978 | 205 | 17985 | 361 | 4 | 1.1080 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.0571 | 98.8804 | 97.2473 | 44.6639 | 11305 | 128 | 11305 | 320 | 3 | 0.9375 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 76.9231 | 100.0000 | 62.5000 | 69.2308 | 5 | 0 | 5 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.1453 | 98.8584 | 99.4339 | 36.2670 | 6668 | 77 | 6675 | 38 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.5309 | 93.0070 | 74.1758 | 91.4794 | 133 | 10 | 135 | 47 | 3 | 6.3830 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.4071 | 93.1373 | 78.8618 | 92.1305 | 95 | 7 | 97 | 26 | 3 | 11.5385 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 57.1429 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 78.3505 | 92.6829 | 67.8571 | 90.1060 | 38 | 3 | 38 | 18 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.1282 | 98.9531 | 99.3039 | 35.7393 | 7278 | 77 | 7276 | 51 | 3 | 5.8824 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.0021 | 98.8951 | 99.1093 | 37.8896 | 4565 | 51 | 4562 | 41 | 2 | 4.8781 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.3592 | 99.0869 | 99.6329 | 31.6608 | 2713 | 25 | 2714 | 10 | 1 | 10.0000 | |